Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0323
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    25   0.44 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   9.5  

>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 282 MKIRFCIFIHSRRINRCNFSQF 347
           M  R CI I S R N  NFS+F
Sbjct: 1   MSTRICIPISSGRTNGSNFSKF 22


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 497 KFNFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSR 598
           + +FY IY   YNI + +   +    +T  R+++
Sbjct: 36  RHSFYKIYKYTYNIVAVSLTAYMVYITTNLRITQ 69


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 454 YPLFTGLSLNSYILKIQFLQY 516
           YPLF  L +++ +LKI   +Y
Sbjct: 158 YPLFVLLIVSNVVLKILVEKY 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,507
Number of Sequences: 336
Number of extensions: 1993
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)