Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0323
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    79   8e-16

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 38/81 (46%), Positives = 51/81 (62%)
 Frame = +2

Query: 11  PGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSA 190
           P FG++SHII      K  F                 +V +HH+FTVG+D+DTRAYF++A
Sbjct: 256 PAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAA 314

Query: 191 TIIIAVPTGIKIFR*LATIHG 253
           T++IA+PTGIKIF  LAT+ G
Sbjct: 315 TMVIAIPTGIKIFSWLATLTG 335



 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 38/73 (52%), Positives = 45/73 (61%)
 Frame = +1

Query: 289 LGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFT 468
           +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 469 GLSLNSYILKIQF 507
           GL  N  +  IQF
Sbjct: 408 GLMYNETLASIQF 420



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +3

Query: 513 IFIGVNITFFPQHFLGLAGIPRRYSDYPD 599
           +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 423 LFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,316
Number of Sequences: 5004
Number of extensions: 30814
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)