Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0323
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    29   3.5  
08_02_1243 - 25527523-25527960,25527993-25528604                       28   6.1  
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482...    28   8.0  

>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   ETRIWYNFSYYFTRKRKKRNFWLFRNN 87
           E  IW  F+   T K K+ +FW+F+ +
Sbjct: 52  EGSIWPKFAVALTNKEKEEDFWVFKGS 78


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  KRKKRNFWLFRNNLCYTSNWVIRIYCLS 132
           +R+ R FWLFR   C+   +  RI CLS
Sbjct: 19  RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45


>03_06_0250 +
           32645600-32646649,32647549-32647791,32648008-32648229,
           32648375-32648443,32650681-32650768,32651147-32651230,
           32651494-32651582,32651933-32652046,32652513-32652647,
           32652847-32653071
          Length = 772

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 435 WGIY*LISFIYRPFIKFLYTKNSIFTI 515
           +G++  ISFI  PFI FL+ + S F I
Sbjct: 429 FGMFSKISFICVPFISFLHFEGSFFQI 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,641,288
Number of Sequences: 37544
Number of extensions: 145453
Number of successful extensions: 320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)