Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0323
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 85 4e-17
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 8.2
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 85.4 bits (202), Expect = 4e-17
Identities = 43/83 (51%), Positives = 51/83 (61%)
Frame = +1
Query: 259 INYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXX 438
I + +L +GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS
Sbjct: 36 IRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFA 95
Query: 439 XXXN*YPLFTGLSLNSYILKIQF 507
+ TG N KI F
Sbjct: 96 GFYFWFGKITGYCYNELYGKIHF 118
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +3
Query: 486 LYTKNSIFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 599
LY K + +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/33 (69%), Positives = 31/33 (93%)
Frame = +2
Query: 155 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHG 253
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYG 33
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 64.5 bits (150), Expect = 8e-11
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +3
Query: 486 LYTKNSIFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 599
LY K + +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 549 HFLGLAGIPRRYSDYPD 599
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 549 HFLGLAGIPRRYSDYPD 599
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 549 HFLGLAGIPRRYSDYPD 599
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 549 HFLGLAGIPRRYSDYPD 599
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 549 HFLGLAGIPRRYSDYPD 599
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 549 HFLGLAGIPRRYSDYPD 599
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -2
Query: 270 VIINLIPCIVASHLKILIPVGTAIIIVAEVKYARVSISIPTV 145
V++ + +V S + +++PV +++V V + V +S+P V
Sbjct: 1369 VVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPAV 1410
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -2
Query: 270 VIINLIPCIVASHLKILIPVGTAIIIVAEVKYARVSISIPTV 145
V++ + +V S + +++PV +++V V + V +S+P V
Sbjct: 384 VVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPAV 425
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,072
Number of Sequences: 59808
Number of extensions: 190187
Number of successful extensions: 437
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -