Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0323
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 292 GFVFLFTVGGLTGVI 336
           G V +  VGGLTG+I
Sbjct: 201 GSVVIHVVGGLTGLI 215


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 247 TWNQINYNPNI 279
           ++NQ+NYN NI
Sbjct: 541 SYNQLNYNENI 551


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 235 TSYNTWNQINYNPN 276
           ++YN +N  NYN N
Sbjct: 92  SNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 235 TSYNTWNQINYNPN 276
           ++YN +N  NYN N
Sbjct: 92  SNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 235 TSYNTWNQINYNPN 276
           ++YN +N  NYN N
Sbjct: 92  SNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 235 TSYNTWNQINYNPN 276
           ++YN +N  NYN N
Sbjct: 92  SNYNNYNNNNYNNN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,302
Number of Sequences: 438
Number of extensions: 2568
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)