Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0322
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47289| Best HMM Match : CXCXC (HMM E-Value=0.15)                    30   1.6  
SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)                     28   6.3  
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)                        28   6.3  
SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)                   28   8.3  
SB_38100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   8.3  

>SB_47289| Best HMM Match : CXCXC (HMM E-Value=0.15)
          Length = 129

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = -2

Query: 398 DTVISTCIVLMKRCIKLFAILKYVQCAKLNCTINKQNIARVTFVILSLIEGLQWSRHVNA 219
           D  +STC     +C+ + A+ +  Q +K  CT      +  T   L L++   W RHVN 
Sbjct: 27  DLDLSTC-----QCVDVQALQRVNQSSKSRCTPITHGPSDYTQRSLRLLQADSWIRHVNQ 81

Query: 218 GSED 207
            +++
Sbjct: 82  ANQE 85


>SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 687 YFVYFYFYMDNLILFVRSLVS*VAQFNIPTRPTCILQT 574
           +  Y YFY D  + +V+SL++    F IP   TC+  T
Sbjct: 33  FMKYAYFYFDEFLPYVKSLITFCFYFCIP-HDTCMKPT 69


>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 308 CTINKQNIARVTFVILSLIEGLQWSRHVNAGS 213
           C ++ + +  +T++ + L + L+WS+HV + S
Sbjct: 150 CVVHLEQVQSITYLGVILNDDLKWSKHVKSTS 181


>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 864

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 308 CTINKQNIARVTFVILSLIEGLQWSRHVNAGS 213
           C ++ + +  +T++ + L + L+WS+HV + S
Sbjct: 580 CGVHLEQVQSITYIGVILNDDLKWSKHVKSTS 611


>SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)
          Length = 581

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 392 VISTCIVLMKRCIKLFAILKYVQC-AKLNC-TINKQNIARVTFVIL 261
           ++  C+  +KR +  F+ L+Y QC  K +C  +N Q I  V F +L
Sbjct: 303 ILLGCLCRLKRAVDTFSFLQYPQCLTKSDCVALNIQII--VVFAVL 346


>SB_38100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 337 SIANNFIHLFIRTIHVDITVSGIEIETDSY 426
           +  NN +H  I+ + V++    + ++TDSY
Sbjct: 84  AFVNNTLHSMIKQVRVELNNRAVTLQTDSY 113


>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 666

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 308 CTINKQNIARVTFVILSLIEGLQWSRHVNAGS 213
           C ++ + I  +T++ + L + L+WS+HV + S
Sbjct: 455 CGVHLEQIQSITYLGVILNDDLKWSKHVKSTS 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,078
Number of Sequences: 59808
Number of extensions: 358706
Number of successful extensions: 847
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)