Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0321
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54CZ0 Cluster: Transcription initiation factor TFIID s...    33   8.6  

>UniRef50_Q54CZ0 Cluster: Transcription initiation factor TFIID
            subunit; n=3; Eukaryota|Rep: Transcription initiation
            factor TFIID subunit - Dictyostelium discoideum AX4
          Length = 3004

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 224  IVYCFIYCF---SHFNILPFRLFTRAHGAIFIHWSLFFWRTFF*YLFWLIVSLFYWRFFF 54
            ++Y FI+ F     F    F  F       FI +  FF+  +F ++F+ I S F + FFF
Sbjct: 858  LIYLFIFGFWFLVDFYFFYFFFFYFFFFIYFIFFIFFFFYFYFIFIFFFIFSFFNFFFFF 917

Query: 53   CF 48
             F
Sbjct: 918  FF 919


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,372,034
Number of Sequences: 1657284
Number of extensions: 6575456
Number of successful extensions: 14728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 14061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14590
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)