Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0321
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)                 30   2.0  
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             28   8.1  

>SB_59375| Best HMM Match : TPR_2 (HMM E-Value=7.3e-06)
          Length = 383

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 156 SSREQSEGKDVEVTEAIDKTID-NPSDLLIESE 251
           S+  + EG D E TEA+D  I+  P  LL++ E
Sbjct: 348 STASEGEGSDGEYTEALDAAINQKPGSLLVQKE 380


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 7   ERKPHQIYKIWLEMKQKKNLQ*KRLTMSQ-KRYQKKVLQKKRD 132
           ER+  ++Y   + ++ +  LQ KRL + Q K+Y KK+LQ+K+D
Sbjct: 708 EREKTRLYNDKILVEDE--LQTKRLEVQQCKKYIKKLLQEKKD 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,917
Number of Sequences: 59808
Number of extensions: 192000
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)