Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0321
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    30   1.3  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    30   1.3  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    30   1.3  
U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like p...    30   1.8  
U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like p...    30   1.8  
AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like ...    30   1.8  

>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 168 QSEGKDVEVTEAIDKTIDNPSDLL 239
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALSKNVDNPLDLM 180


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 168 QSEGKDVEVTEAIDKTIDNPSDLL 239
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALSKNVDNPLDLM 180


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 168 QSEGKDVEVTEAIDKTIDNPSDLL 239
           +  GKD+++  A+ K +DNP DL+
Sbjct: 155 RDSGKDIQLVGALSKNVDNPLDLM 178


>U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform b protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 168 QSEGKDVEVTEAIDKTIDNPSDLL 239
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALPKNVDNPLDLM 180


>U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform a protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 168 QSEGKDVEVTEAIDKTIDNPSDLL 239
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALPKNVDNPLDLM 180


>AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like
           protein protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 168 QSEGKDVEVTEAIDKTIDNPSDLL 239
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALPKNVDNPLDLM 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,833,786
Number of Sequences: 27780
Number of extensions: 164597
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)