Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0320
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.37 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   2.0  
UniRef50_A0YUE9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.1 bits (82), Expect = 0.37
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = +1

Query: 196 FLFLRCLGEITAHLVLSGY*AHRHL 270
           FL LR + E+TAHLVLSGY + RHL
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRHL 178


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 391 WYLPVRTHKRSYH 429
           WYLP RTHKRSYH
Sbjct: 572 WYLPARTHKRSYH 584


>UniRef50_A0YUE9 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 735

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +3

Query: 342 LQTETHYCFTAEIGGAVVPTRADSQEVLPPRGNYANHNFAGLIFIARCYSFTVEVNVNIC 521
           LQTE   C T EI   ++  +  +Q+    R  +A  NF  L       S   E++  + 
Sbjct: 225 LQTELELCITDEIFNTIILLK--NQKEKKKRRRFAQENFTYL-------SSNKELDCTVD 275

Query: 522 *VRISLQKLEPASEI-RTPVHRSITNAPGRIILLGPRRLQL 641
            V + LQK    +E  R  + R+IT+     + L P+ L+L
Sbjct: 276 SVNVILQKASEVNEFERRNLARAITSKSQVFVTLHPQLLEL 316


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,824,315
Number of Sequences: 1657284
Number of extensions: 14179243
Number of successful extensions: 26597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26590
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)