Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0320
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.9  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   6.7  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 524 STYFITKIGTRQRDSNTSASLDYECTGTYYPF 619
           STY I   GT QR S     L+      YY F
Sbjct: 152 STYGIQVFGTMQRTSFFKTFLNSCLMDVYYEF 183


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 264 TSTT*MRHTP*DIVLRSQCSHNGCPTLQTETHYCFTAEIGG 386
           TS     H   DIV   Q  HN    L  E + CF  +I G
Sbjct: 196 TSLIHSTHLNGDIVKEHQNLHNKICNLIDEFNECFGLQILG 236


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 450 DLRNYL*VVGPLVSPHG*VPPP 385
           DL N      P V PH  VPPP
Sbjct: 2   DLTNSTEKFLPTVLPHQEVPPP 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,805
Number of Sequences: 336
Number of extensions: 3682
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)