Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0320
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   3.1  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.6  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.6  

>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 111 QCQS-LVGITMLGGFFLTKILVLKYNPFDFAL 19
           QC S L  +T+   F L    +LKYNP +F L
Sbjct: 113 QCASGLADVTVASVFSLKNERLLKYNPLNFKL 144


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 5   TRWDCRAKSNGLYFNTKIFVKK 70
           T W   + +N  Y+NTK+F  K
Sbjct: 292 TFWQFSSDNNHFYYNTKLFAAK 313


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 81   LGGFFLTKILVLKYNPFDFALQS 13
            L GFF+ K+ +LK+N  +F+  S
Sbjct: 1210 LWGFFIPKLEMLKFNAHEFSSPS 1232


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 471 FIARCYSFTVEVNVNIC*VRISLQKLEPASEIRTPVHRSITN 596
           F A C+   V VN N+       + LE AS++  P+H  + N
Sbjct: 353 FAAACFLQDVHVNANV-------EALEKASKLLEPLHDLVAN 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,394
Number of Sequences: 5004
Number of extensions: 59912
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)