Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0320
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1042 + 8187536-8187616,8187713-8188315                           31   1.1  
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716...    28   5.7  
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    28   7.5  
10_03_0020 - 7126478-7126698,7127665-7127763,7127813-7128140           27   9.9  
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580...    27   9.9  
01_06_1749 - 39636951-39638102                                         27   9.9  

>06_01_1042 + 8187536-8187616,8187713-8188315
          Length = 227

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 566 SNTSASLDYECTGTYYPFRATTTSTYM 646
           S +S+ LD E TG+++P R+TT  T M
Sbjct: 18  SPSSSDLDTESTGSFFPDRSTTLGTLM 44


>08_02_1258 -
           25670092-25670152,25671124-25671327,25671400-25671611,
           25671701-25671749,25671833-25672612,25672696-25672767,
           25672907-25672954,25673053-25673127,25673238-25673312,
           25673614-25673668,25673931-25674016,25674759-25674988
          Length = 648

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 310 LRTISQGVWRIYVVDVYGLSNHLTPGGL 227
           L T+   +WRI+ VD YG+S    P GL
Sbjct: 329 LDTLVTYLWRIHGVDYYGMSETNEPKGL 356


>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 297 DIVLRSQCSHNGCPTLQTETH 359
           D++ RS   H   P  QTETH
Sbjct: 477 DVIRRSASGHEAAPPFQTETH 497


>10_03_0020 - 7126478-7126698,7127665-7127763,7127813-7128140
          Length = 215

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 215 WARSQPTWC*VVTEPIDIYNVNAPHTLRYSSKVSV 319
           W  ++ TW  +   P+    ++AP   RY+SKV V
Sbjct: 48  WRSTRRTWWLLSAMPVTARGLHAPIISRYASKVRV 82


>03_06_0427 -
           33857008-33857137,33857224-33857258,33857966-33858046,
           33858213-33858338,33858410-33858568,33858797-33858934,
           33859084-33859155,33859359-33860273
          Length = 551

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 616 RIIRPGAFVIERCTGVRISLAGSNFCNEIRTQQMF-TLTSTVKE 488
           +++RPG  V+ R    +    G NFC  + T  M  TL + V +
Sbjct: 374 QMVRPGLGVLTRPLPTKYRSLGDNFCERVLTSLMHETLKAVVAQ 417


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 316 SVVTTAAPPFKPKRITA 366
           SV + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,700,303
Number of Sequences: 37544
Number of extensions: 389185
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)