Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0320
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine rece...    27   8.9  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   8.9  

>U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine
           receptor, class v protein28 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 163 LPTGTFIYIYFFLFLRCLG 219
           +  GT+  IY+FL++RC G
Sbjct: 86  IAAGTYNSIYYFLYIRCAG 104


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 306  LRSQCSHNGCPTLQTETHYC 365
            L++QC H  C  L  ETH C
Sbjct: 1448 LKAQCVHGECIQLSPETHTC 1467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,896
Number of Sequences: 27780
Number of extensions: 345967
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)