Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0319
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FTG0 Cluster: Phage integrase domain protein SAM doma...    35   2.2  
UniRef50_Q0AZY0 Cluster: Molecular chaperone-like protein; n=1; ...    33   5.0  
UniRef50_A5JSV3 Cluster: Breast cancer susceptibility protein 2;...    33   8.7  
UniRef50_Q1VZJ1 Cluster: Histidine kinase response regulator hyb...    33   8.7  

>UniRef50_A5FTG0 Cluster: Phage integrase domain protein SAM domain
           protein; n=2; Acidiphilium cryptum JF-5|Rep: Phage
           integrase domain protein SAM domain protein -
           Acidiphilium cryptum (strain JF-5)
          Length = 375

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -2

Query: 414 STLSAYLPATRRWCIWCYSFKIDP---KSADVAKFFLLFQKENFAYKTILLHHKAARRL 247
           +T  AY  A R WC+WC    + P     ADVA F    +    + +T+ L   A R L
Sbjct: 72  NTRRAYRAAVRVWCLWCDRHGLTPLPASGADVAAFLADERGRGVSTETLKLRRAAIRYL 130


>UniRef50_Q0AZY0 Cluster: Molecular chaperone-like protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Molecular chaperone-like protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 569

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 411 TLSAYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQK 301
           T++AYLP+ RR C    + +ID   A+ A FF L  K
Sbjct: 36  TVAAYLPSQRRLCFGPLALRIDEAGAETAFFFKLALK 72


>UniRef50_A5JSV3 Cluster: Breast cancer susceptibility protein 2;
           n=2; Tetraodon nigroviridis|Rep: Breast cancer
           susceptibility protein 2 - Tetraodon nigroviridis (Green
           puffer)
          Length = 841

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = -1

Query: 226 RTANILKLSNKNCY--FKKAIGIAKQNSTTYYNFTKCSPIHMRSENSSKLVFFKPSHHIT 53
           R +N  +L   N    F K + +   NS T   F    P   +S NSSK    +P HH  
Sbjct: 22  RDSNEARLQKSNFIPPFIKNVKLDTPNSKTASTFV---PPFKKSRNSSKTEEEEPKHHFI 78

Query: 52  P----QCSLKDTNNHVAG 11
           P     C+   T  H AG
Sbjct: 79  PPFTNPCATSSTKKHTAG 96


>UniRef50_Q1VZJ1 Cluster: Histidine kinase response regulator hybrid
           protein; n=1; Psychroflexus torquis ATCC 700755|Rep:
           Histidine kinase response regulator hybrid protein -
           Psychroflexus torquis ATCC 700755
          Length = 267

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 241 HRKSTRCFMMQKDCFIGKIFFLEKKKEFGN--ICRLRINFKTVA 366
           H+K    F  +KD  IG + +L++ KE+G   + ++ + +K +A
Sbjct: 123 HKKQNNLFTTEKDALIGLVGYLDEVKEYGRGAVTKVPVPYKKIA 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,602,923
Number of Sequences: 1657284
Number of extensions: 14914902
Number of successful extensions: 33524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33520
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)