Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0319
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.77 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.77 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    25   0.77 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.2  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 549 ELSSVRDLRAWKPKC 593
           EL+ +RD + WK KC
Sbjct: 461 ELNGLRDFQEWKEKC 475


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 549 ELSSVRDLRAWKPKC 593
           EL+ +RD + WK KC
Sbjct: 468 ELNGLRDFQEWKEKC 482


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 127 KCSPIHMRSENSSKLVFFKPSHHITPQCSLKDTNNH 20
           +C P+ + S++ + L     SHH+  + S   ++NH
Sbjct: 333 RCHPLSLSSDHQAMLHHNPMSHHLKQEPSGFTSSNH 368


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 425 AGVNPLCQHTYQQLEDGAYGATVLK 351
           AG +    HT  Q  DG YG+ V++
Sbjct: 238 AGTHFWHAHTGLQKMDGLYGSVVIR 262


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 425 AGVNPLCQHTYQQLEDGAYGATVLK 351
           AG +    HT  Q  DG YG+ V++
Sbjct: 238 AGTHFWHAHTGLQKMDGLYGSVVIR 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,330
Number of Sequences: 336
Number of extensions: 4002
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)