Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0319
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    26   4.5  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   7.8  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    25   7.8  

>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -2

Query: 411 TLSAYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAARRLSVGEI 232
           T+  Y P  R +    Y    D    D  +    +QKENF YK + L  K  +  +   I
Sbjct: 203 TIVCYAPLGRGFLTGAYKSPDDFPEGDFRRKAPRYQKENF-YKNLELVTKIEKIATANNI 261

Query: 231 HVGQ 220
             GQ
Sbjct: 262 TPGQ 265


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 139 YNFTKCSPIHMRSENSSKLVFFKPSH 62
           YNF+     + +S  SSKL FFKPS+
Sbjct: 38  YNFSSGHEEN-QSHKSSKLTFFKPSN 62


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 346 INFKTVAPYAPSSSCW*VC*QSGLTP 423
           ++ K VAPY+    CW +  + GLTP
Sbjct: 271 VSEKRVAPYSKDKKCWNL--EFGLTP 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,550
Number of Sequences: 5004
Number of extensions: 63716
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)