Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0319
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42265| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_37731| Best HMM Match : TPD52 (HMM E-Value=1.2) 31 1.2
SB_3626| Best HMM Match : RelB (HMM E-Value=0.84) 30 1.5
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99) 29 3.6
SB_17876| Best HMM Match : Alpha_kinase (HMM E-Value=7.6e-08) 29 4.7
SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5) 28 8.2
SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4) 28 8.2
>SB_42265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Frame = -2
Query: 438 LLKISWCQSTLSAYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKA 259
++ W T Y ++WC WC K+D A V + +Y TI + A
Sbjct: 154 IISAPWSTGTDKQYNTVWKKWCCWCDQRKVDLLHAPVREVVNFL---GTSYSTINTYRSA 210
Query: 258 --ARRLSVGEIHVGQQTFSSSLIK 193
SV + VG + L K
Sbjct: 211 LSTTLYSVNNVAVGSHPLVTRLPK 234
>SB_37731| Best HMM Match : TPD52 (HMM E-Value=1.2)
Length = 499
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -2
Query: 450 TGEDLLKISWCQSTLSAYLPATRRWCIWCYSFKIDPKSADV---AKFFLLFQKENFAYKT 280
T E +L+ W T Y +RW ++C KI+P SA V F + +E Y
Sbjct: 366 TSEVILQ-GWRSGTQKQYHSYIKRWNVYCSQRKINPLSASVIDGLNFLGVLYEEQLQYSA 424
Query: 279 I 277
I
Sbjct: 425 I 425
>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
Length = 496
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 450 TGEDLLKISWCQSTLSAYLPATRRWCIWCYSFKIDPKSADV 328
+ +DL+ SW ST Y RW +C +DP A V
Sbjct: 335 SAKDLIAASWWNSTSKQYQTYLTRWHTFCVEQGLDPFHATV 375
>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -2
Query: 423 WCQSTLSAYLPATRRWCIWCYSFKIDPKSADV---AKFFLLFQKENFAYKTI 277
W T Y +RW ++C KI+P S V F +F +E Y I
Sbjct: 298 WRSGTQKQYHSYLKRWNVYCSQRKINPLSTSVIDGLNFLGVFYEEQLQYSAI 349
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 56 DVVAGFEENQFRTILGSHVNGTTLSKIVISS*ILFSYSDGFFKIAIFIRELENVCCPT 229
DV Q ++ SH NGTT I +S Y+ GF++I + + EN+ PT
Sbjct: 75 DVCEQLVAKQVHIVIVSHPNGTTDPPISVS------YACGFYRIPVIGIQPENLYFPT 126
>SB_7268| Best HMM Match : DUF472 (HMM E-Value=0.99)
Length = 554
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 471 TNNRLV*TGEDLLKISWCQSTLSAYLPATRRWCIWCYSFKIDPKSA---DVAKFFLLFQK 301
T+ L + +++ W T Y +RW ++C KI+P SA D F + +
Sbjct: 274 TSQGLSASASEVILQGWRSGTQKQYHSYLKRWNVYCSQRKINPLSAFVIDGLNFLGVLYE 333
Query: 300 ENFAYKTI 277
E Y I
Sbjct: 334 EQQQYSAI 341
>SB_17876| Best HMM Match : Alpha_kinase (HMM E-Value=7.6e-08)
Length = 407
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 690 GEFPPLNLLPKSTDSLQQCLGNLPG--SVPRLSESIWVSKPSDP 565
G P ++ +PK ++ GN PG ++PR SE ++ + P
Sbjct: 225 GNTPGMDTIPKGSEGFHDTQGNTPGMDTIPRRSEGFHDTQGNTP 268
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 690 GEFPPLNLLPKSTDSLQQCLGNLPG--SVPRLSESIWVSKPSDP 565
G P ++ +PK ++ GN PG ++PR SE ++ + P
Sbjct: 105 GNTPGMDTIPKGSEGFDDTQGNTPGMDTIPRGSEGFHDTQGNTP 148
>SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)
Length = 582
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 441 DLLKISWCQSTLSAYLPATRRWCIWCYS 358
D+L SW +ST Y + W WC S
Sbjct: 207 DILLASWSESTKKRYQGPWKCWSQWCSS 234
>SB_19238| Best HMM Match : DUF729 (HMM E-Value=1.4)
Length = 647
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 591 IWVSKPSDPER*ITRTKSKTCLLHR 517
+WV K SDP++ I RTK K LH+
Sbjct: 375 VWV-KQSDPKKRIERTKPKAVELHK 398
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,200,913
Number of Sequences: 59808
Number of extensions: 470226
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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