Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0319
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    28   7.2  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    28   7.2  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    28   7.2  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    28   7.2  

>U00065-3|AAK68286.3|  981|Caenorhabditis elegans Hypothetical
           protein D1044.8 protein.
          Length = 981

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 690 GEFPPLNLLPKSTDSLQQCLGNLPGSV---PRLSESIWVSKPSDPER*ITRTKSKTC 529
           G+ PP+N  P+   S+       P S+   PR+++   V  PS P    +R + +TC
Sbjct: 776 GKLPPINPAPRRNHSMSAGETPRPSSIVCLPRITDKYSVMFPSAPSAIPSRRRVQTC 832


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 229 CRTANILKLSNKNCY-FKKAIGIAKQNSTTYYNFTKCSPIHMRSENSSKLVFFKPSHHIT 53
           C T N+ KLS+K    +KK  G  K+  +   +      + +   N       K     T
Sbjct: 767 CSTVNVDKLSDKEYKEYKKKCG--KKIRSEVCDDVNVDSLSVEQYNEYLRNCEKKPRRKT 824

Query: 52  PQCSLKDTN 26
           P+CS+KDT+
Sbjct: 825 PECSIKDTS 833


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -1

Query: 628 EPTW*CSQTERKHLGFQALRSRTLDNSHEIQNLPPPQVKHNPESL 494
           EPT   SQ E  H+  +     T DN+ ++Q LP PQVK N   L
Sbjct: 647 EPT--LSQEEIDHIA-RITAMATEDNT-DLQTLPTPQVKQNEPEL 687


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 402 AYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAARRLSVGEIH 229
           A++  T      CY F ++P +A +AK      K    Y+ +L  H ++R  S   IH
Sbjct: 485 AFIMQTSSESFMCYVFHVEPNAAAMAKMVEAACK--LRYQKVLDAHSSSRHHSGMSIH 540


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 402 AYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAARRLSVGEIH 229
           A++  T      CY F ++P +A +AK      K    Y+ +L  H ++R  S   IH
Sbjct: 462 AFIMQTSSESFMCYVFHVEPNAAAMAKMVEAACK--LRYQKVLDAHSSSRHHSGMSIH 517


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 402 AYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAARRLSVGEIH 229
           A++  T      CY F ++P +A +AK      K    Y+ +L  H ++R  S   IH
Sbjct: 624 AFIMQTSSESFMCYVFHVEPNAAAMAKMVEAACK--LRYQKVLDAHSSSRHHSGMSIH 679


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 402 AYLPATRRWCIWCYSFKIDPKSADVAKFFLLFQKENFAYKTILLHHKAARRLSVGEIH 229
           A++  T      CY F ++P +A +AK      K    Y+ +L  H ++R  S   IH
Sbjct: 573 AFIMQTSSESFMCYVFHVEPNAAAMAKMVEAACK--LRYQKVLDAHSSSRHHSGMSIH 628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,841,991
Number of Sequences: 27780
Number of extensions: 367548
Number of successful extensions: 910
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)