Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0319
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 204 SLIKIAILKKPSE*LNKIQLLITILLSVVPF 112
           S + + +   PS+   K+ L I+ILLS+  F
Sbjct: 251 SFLSVLVFYLPSDSGEKVSLSISILLSLTVF 281


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 250 TFCGRNTCRTANILKLSNKNCYFKKAIGIAKQNSTTYYNFTKCSPIHMRSENSS 89
           T  G ++ R ++I+   NK     +     +QNS   YN +     ++R E  S
Sbjct: 341 TRTGLSSVRDSSIICGGNKRSQVFRGRDANRQNSCNIYNASSRMENNLRGETQS 394


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 318 FLLFQKENFAYKTILLHHKAARRLSVG-EIHVGQQTFSSSLIKIAILKKPSE*LNKIQLL 142
           +L   K +F  +T +  +   RR ++   +++   T   S + + +   P+E   K+ L 
Sbjct: 209 YLNTYKGDFPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLG 268

Query: 141 ITILLSVVPF 112
           I+ILLS+V F
Sbjct: 269 ISILLSLVVF 278


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 204 SLIKIAILKKPSE*LNKIQLLITILLSVVPF 112
           S + + +   PS+   K+ L I+ILLS+  F
Sbjct: 255 SFLTVLVFYLPSDSGEKVSLSISILLSLTVF 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,830
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)