Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0318
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    62   1e-10

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +1

Query: 301 SPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLF 474
           SP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L+
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLY 176

Query: 475 LTILLGFYF 501
           +TI L F F
Sbjct: 177 MTIALSFLF 185



 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 21/38 (55%), Positives = 27/38 (71%)
 Frame = +3

Query: 486 IRILFYYLQAYEYIEASFTIADRIYGSTFFIATGFHGI 599
           +  LF   QAYEY  A FTI+D +YG++F+ ATG HGI
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGI 218



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 159 RDISREGTYQGKHTILVNKGLR*G 230
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,399
Number of Sequences: 5004
Number of extensions: 39072
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)