Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0318
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    62   3e-10
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   3.9  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   3.9  
At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate mu...    25   6.3  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 41/124 (33%), Positives = 58/124 (46%)
 Frame = +1

Query: 301 SPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLT 480
           +P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  T
Sbjct: 110 APAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVAT 169

Query: 481 ILLGFYFTIYKHMNI*KLLLQLLIEFMDPLFS*QQDFMEFHVINWNFISINFAIIRHLNN 660
           +LL   FT ++ M   +    +        F     F  FHVI      I   I ++L  
Sbjct: 170 VLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYL-G 228

Query: 661 HFSK 672
           H +K
Sbjct: 229 HLTK 232


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 LQAYEYIEASFTIADRIYGSTFFIATGFHG 596
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 LQAYEYIEASFTIADRIYGSTFFIATGFHG 596
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


>At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 225

 Score = 25.4 bits (53), Expect(2) = 6.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 275 FELFSIEDYPQILKLEEYDP 334
           FEL S + YP+I  L+E DP
Sbjct: 116 FELKSHDKYPEIWALDEKDP 135



 Score = 21.0 bits (42), Expect(2) = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 308 ILKLEEYDPLQELHHLIHS 364
           IL +   DPLQ L ++ HS
Sbjct: 168 ILVVSHGDPLQMLQNVFHS 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,012,413
Number of Sequences: 28952
Number of extensions: 177309
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)