Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0317
         (604 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O94289 Cluster: Ubiquitin homeostasis protein lub1; n=1...    34   3.0  
UniRef50_Q47J12 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  

>UniRef50_O94289 Cluster: Ubiquitin homeostasis protein lub1; n=1;
           Schizosaccharomyces pombe|Rep: Ubiquitin homeostasis
           protein lub1 - Schizosaccharomyces pombe (Fission yeast)
          Length = 713

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
 Frame = -2

Query: 426 FYNN*TGFTAAHCYASCVDGWST--ESRCVVHLGLLVKNIDYYIFGGKQTTTDRELRSNT 253
           FY N  GF    CY   +D  S   + +C +   +   +  YY+FG +         ++ 
Sbjct: 51  FYENHEGFVNCVCYVPAIDKNSRGGQDKCGILQEVGTNSPSYYLFGHESNICSASALNSE 110

Query: 252 TVTGGPPEATHR-------KFVLCASSESLW 181
           T+  G  ++T R       K+VL     S+W
Sbjct: 111 TIITGSWDSTARVWALGQCKYVLKGHQSSVW 141


>UniRef50_Q47J12 Cluster: Putative uncharacterized protein; n=1;
           Dechloromonas aromatica RCB|Rep: Putative
           uncharacterized protein - Dechloromonas aromatica
           (strain RCB)
          Length = 253

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 408 GFTAAHCYASCVDGWSTESRCVVHLGLLVKNIDYYIFGGKQTTTDRELRSNTTVTGG 238
           G  AAHCY  C  G S E+R  + L LL+  +D +     Q      + + T + GG
Sbjct: 52  GEVAAHCYDWCQGGASDEAR-ALRLALLISGLDQWGLAYTQAFKLDAIHALTALIGG 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,873,677
Number of Sequences: 1657284
Number of extensions: 10238435
Number of successful extensions: 21261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21256
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)