Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0317
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    34   0.018
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   2.1  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.4  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
 Frame = -2

Query: 426 FYNN*TGFTAAHCYASCVDGWST--ESRCVVHLGLLVKNIDYYIFGGKQTTTDRELRSNT 253
           FY N  GF    CY   +D  S   + +C +   +   +  YY+FG +         ++ 
Sbjct: 51  FYENHEGFVNCVCYVPAIDKNSRGGQDKCGILQEVGTNSPSYYLFGHESNICSASALNSE 110

Query: 252 TVTGGPPEATHR-------KFVLCASSESLW 181
           T+  G  ++T R       K+VL     S+W
Sbjct: 111 TIITGSWDSTARVWALGQCKYVLKGHQSSVW 141


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 55   NTPKNNRNTDLQRLRNKKDRRPNKTVITRYLRTKLYI*RPLKPEALR 195
            NT KNNR  + +R R KK     +  +   LR  +     ++PE  R
Sbjct: 1138 NTSKNNRRLERKRARGKKGTVFEEEYLVNSLRRLIARVEEIRPEVHR 1184


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 LVDGLFCSVIFVGQYFYCSSECFTKRVKELEVDGIDKLDI 2
           L DG  C+V     Y Y S+ C  + V + + DGI+ +++
Sbjct: 71  LTDGAVCTV-----YVYSSNNCTGEPVFQTDSDGIECINV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,901
Number of Sequences: 5004
Number of extensions: 45260
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)