Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0317
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0222 - 1699009-1699698,1700922-1701247,1701342-1701513           30   1.6  
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360...    28   5.0  
08_01_0154 + 1212989-1213054,1213197-1213394,1213424-1213477,121...    27   8.7  

>06_01_0222 - 1699009-1699698,1700922-1701247,1701342-1701513
          Length = 395

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = -2

Query: 375 VDGWSTESRCVVHLGLLVKNIDYYIFGGKQTTTDRELRSNTTVTGGPPEATHRKFVLCAS 196
           ++ W  + RC +  G      D+Y F  K        R+N     G  +AT R   + +S
Sbjct: 51  LEPWDIQERCRIGSG---PQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSS 107

Query: 195 SESLWFKRTL 166
           S  +  ++TL
Sbjct: 108 SNRIGMRKTL 117


>09_04_0388 +
           17234485-17234583,17234710-17234893,17235252-17236057,
           17236148-17236432
          Length = 457

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +2

Query: 80  LTYKDYGTKKTVDQTKR*SHVIFALSCTFSVLLNQRLSDDAHNTNLRCVASGG 238
           L    YGTK  +       H    + C   +++N R +DD     + C+  GG
Sbjct: 104 LNASKYGTKAELKSLIAAFHAK-GIKCVADIVVNHRCADDKDGRGVYCIFKGG 155


>08_01_0154 +
           1212989-1213054,1213197-1213394,1213424-1213477,
           1215014-1215241
          Length = 181

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 55  NTPKNNRNTDLQRLRNKKDRRPNK 126
           NT KN RNT L  L NK++R  NK
Sbjct: 56  NTGKN-RNTSLSVLPNKREREKNK 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,446
Number of Sequences: 37544
Number of extensions: 273467
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)