Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0317
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    25   0.43 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.57 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.3  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
 Frame = -2

Query: 327 LVKNIDYYIFGGKQ--TTTDRELRSNTTVTGGPPEATHRKFVLCASSESLWFKRTLNVQL 154
           L KN D + F       T  +  + N       P    RKF    S E   FK    V  
Sbjct: 41  LSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVND 100

Query: 153 SAKITCDYRF 124
           S K+T  Y F
Sbjct: 101 SLKVTRLYEF 110


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 354 TLLTSHQHNLHNNEPR*NPSNCYKNT 431
           +LLTS  H  HN E   N  +C ++T
Sbjct: 47  SLLTSQPHQDHNKEKSKNNHHCNQDT 72


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 55  NTPKNNRNTDLQRLRNKKDRRPNKTVITRYLRTKLYI*RPLKPEAL 192
           N  KNN   D+ +L NK   R N  + T  + + L + + + P A+
Sbjct: 508 NFSKNNTIVDISKLVNK---RNNAKIYTSSVNSNLTVNQTVNPVAI 550


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
 Frame = -2

Query: 327 LVKNIDYYIFGGKQ--TTTDRELRSNTTVTGGPPEATHRKFVLCASSESLWFKRTLNVQL 154
           L KN D + F       T  +  + N       P    RKF    S E   FK    V  
Sbjct: 39  LSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVND 98

Query: 153 SAKIT 139
           S K+T
Sbjct: 99  SLKVT 103


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 217 TMCGLRGTTGYCCITS*LSVRGSLFTPKNIVV 312
           +M  +    G CC+    S   SL TP N+ +
Sbjct: 65  SMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 217 TMCGLRGTTGYCCITS*LSVRGSLFTPKNIVV 312
           +M  +    G CC+    S   SL TP N+ +
Sbjct: 65  SMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 507 KYFT*PCETSLWFGNITFKS*YGRGLCFYN 418
           K F  P +  +W  N T  + Y + +  YN
Sbjct: 648 KVFGFPLDRPMWAWNFTIPNMYFKDVFIYN 677


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 507 KYFT*PCETSLWFGNITFKS*YGRGLCFYN 418
           K F  P +  +W  N T  + Y + +  YN
Sbjct: 648 KVFGFPLDRPMWAWNFTIPNMYFKDVFIYN 677


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = +1

Query: 196 RRTQHKLTMCGLRGTTGYCCITS*LSVRGSLFTPKNIVVYIFNK 327
           R T   +  C     + Y       S  GS F P  +++Y++ +
Sbjct: 181 RATNRDIKKCSYNMDSSYVIF----SAMGSFFLPMLVMLYVYGR 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,757
Number of Sequences: 438
Number of extensions: 3393
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)