Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0317
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32770.1 68414.m04040 no apical meristem (NAM) family protein...    30   1.0  
At1g75860.1 68414.m08811 expressed protein                             27   7.2  
At2g46770.1 68415.m05835 no apical meristem (NAM) family protein...    27   9.6  

>At1g32770.1 68414.m04040 no apical meristem (NAM) family protein
           similar to OsNAC7 protein GB:BAA89801 GI:6730944 from
           [Oryza sativa]
          Length = 358

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = -2

Query: 375 VDGWSTESRCVVHLGLLVKNIDYYIFGGKQTTTDRELRSNTTVTGGPPEATHRKFVLCAS 196
           ++ W  +  C   +G   +N D+Y F  K        R+N     G  +AT R  ++C+ 
Sbjct: 56  LEPWDIQEEC--RIGSTPQN-DWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSC 112

Query: 195 SESLWFKRTL 166
              +  ++TL
Sbjct: 113 VRRIGLRKTL 122


>At1g75860.1 68414.m08811 expressed protein
          Length = 283

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 387 YASCVDGWSTESRCVVHLGLLVKNIDYYIFGGK 289
           Y +  DGW+  S C+        N DY++FG K
Sbjct: 206 YNALFDGWTPPSMCIADAS-SNDNGDYWLFGNK 237


>At2g46770.1 68415.m05835 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 365

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = -2

Query: 375 VDGWSTESRCVVHLGLLVKNIDYYIFGGKQTTTDRELRSNTTVTGGPPEATHRKFVLCAS 196
           ++ W  +  C +  G   +N D+Y F  K        R+N     G  +AT R  ++ ++
Sbjct: 56  LEPWDIQEMCKI--GTTPQN-DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSN 112

Query: 195 SESLWFKRTL 166
              +  ++TL
Sbjct: 113 GRRIGMRKTL 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,175
Number of Sequences: 28952
Number of extensions: 230332
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)