Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0316
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55640 Cluster: PREDICTED: hypothetical protein;...    38   0.24 
UniRef50_UPI0000DB78FE Cluster: PREDICTED: hypothetical protein;...    33   8.8  

>UniRef50_UPI0000D55640 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 270

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +2

Query: 53  KPNHSFLPKPSELREMNFXSXTSM 124
           K +  F+PKPSELREMNF S TSM
Sbjct: 247 KRSQVFVPKPSELREMNFWSPTSM 270


>UniRef50_UPI0000DB78FE Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 312

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +2

Query: 68  FLPKPSELREMNFXSXTSM 124
           F  KPSELREMNF S TSM
Sbjct: 294 FQAKPSELREMNFWSPTSM 312


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,631,621
Number of Sequences: 1657284
Number of extensions: 10620721
Number of successful extensions: 21418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21403
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)