Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0316
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.8  

>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 144 YALCLFQIFTRVTLSCTERTYSIRISVA 227
           YA+CL  IF R + +C +  YS+ +SVA
Sbjct: 74  YAVCLMNIFFRNSENCFK--YSMNLSVA 99


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 221 RNPYTVSTFSTTKSYTG 171
           R PY+++ FS+TK Y+G
Sbjct: 552 RMPYSINGFSSTKLYSG 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,787
Number of Sequences: 5004
Number of extensions: 49421
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)