Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0316
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673...    29   4.7  

>02_04_0083 +
           19566476-19566539,19566781-19567006,19567206-19567389,
           19569483-19569582,19570015-19570122,19570373-19570452,
           19570566-19570644,19570774-19570832,19570938-19571006,
           19571577-19571690,19571772-19571840,19572340-19572361,
           19572455-19572522,19573630-19573715,19574220-19574349,
           19575032-19575133,19575211-19575279
          Length = 542

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 21  PTSSTRLQRKQNRIIPSSRNHLNCAK*TSXRXRQCEIVPKRYALCL 158
           P +S+ ++R++NR+IP  R HL   K    R R   ++P R+ L L
Sbjct: 87  PVTSSDVRRERNRLIP-DRFHLILRKYHLIRARN-RLIPNRFHLIL 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,484
Number of Sequences: 37544
Number of extensions: 285516
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)