Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0316
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_15281| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 EIVPKRYALCLFQIFTRVTLSCTERT 203
           ++ P R ALC+  + T +TLS + RT
Sbjct: 280 KVAPARVALCITTVLTIITLSASVRT 305


>SB_15281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 155 TQRVSLWYDFTLTXATRSSFRAIQMVSGGRNDSVLFSLETRAAGGDSR 12
           T+RV  WYD     ATRS       V+GG    V  S   R  GG +R
Sbjct: 254 TRRVGSWYDRVTGGATRSVRSWYDRVTGGATRRV-GSWYDRVTGGATR 300



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 155 TQRVSLWYDFTLTXATRSSFRAIQMVSGGRNDSVLFSLETRAAGGDSR 12
           T+RV  WYD     ATR        V+GG   SV  S   R  GG +R
Sbjct: 239 TRRVRSWYDRPTGGATRRVGSWYDRVTGGATRSVR-SWYDRVTGGATR 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,059,173
Number of Sequences: 59808
Number of extensions: 368408
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)