Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0315
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   1.9  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   7.7  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   7.7  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 62  KFYGLIASLLFSPILFVTYQMFYRFRGQVRPRFVIHQYLNFV 187
           KF    A+ +F   LFV Y  +  ++  +R +F  H Y   V
Sbjct: 385 KFTNSSATSIFVSFLFVYYMRYCTYKSLMRTQFAPHYYYALV 426


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 641 PFIYRKSNKFVYKIYSTF 588
           P +Y   NKFV+  Y TF
Sbjct: 31  PAVYSNDNKFVFLTYDTF 48


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 480 TTTSNIF-FIRINLYRNVCPL 539
           T  S+ F + R+NLYR+ CPL
Sbjct: 50  TERSDYFSYYRVNLYRSSCPL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,277
Number of Sequences: 5004
Number of extensions: 48585
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)