Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0315
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z99288-1|CAB16545.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF098993-9|AAC67463.3|  469|Caenorhabditis elegans Hypothetical
           protein T10B11.8 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 435 HYISIFINYHISNNRTTTSNIFFIRINLYRNVCPLEL*INCVK 563
           HY + F NY + N +TT+ +   I +N+ R + PL+   N +K
Sbjct: 346 HYTNSFDNYRMGNEQTTSYDHHPIPVNV-RRLYPLQSHKNIIK 387


>Z99288-1|CAB16545.2|  339|Caenorhabditis elegans Hypothetical
           protein ZK262.1 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 285 YILITYISKNINKSILNCRHD*KHFYGLIAAV 190
           Y LI Y+    N+ I+NC       +GLI+A+
Sbjct: 265 YFLIAYLKNYYNQGIINCLFINTSTHGLISAI 296


>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +2

Query: 263 LMYVIKM*NLLSIYIVINSLFNFKYICC*VFDILIXMYNYAFYNVNKTNCLHVHLFISLY 442
           ++Y++ +   +SIY+V   +  ++Y     F IL  +Y    + +   + L   L   + 
Sbjct: 122 ILYIVHVLKEISIYVVTRRILKYQYKIYNPFSILGLVYGIIIFCMAIFSVLSALLHFPIV 181

Query: 443 KHFYKLSY 466
           K    L+Y
Sbjct: 182 KKIRALTY 189


>Z74042-1|CAA98536.1|  444|Caenorhabditis elegans Hypothetical
           protein T11F9.1 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 85  FIIFAYIICNVSNVLQVSW 141
           FI+F Y++ NV NV+ + W
Sbjct: 266 FIVFTYLLSNVLNVIIIIW 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,155
Number of Sequences: 27780
Number of extensions: 259816
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)