Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0315
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27960.1 68414.m03425 expressed protein contains Pfam profile...    29   3.8  
At3g12870.1 68416.m01604 expressed protein                             28   5.0  
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g...    28   5.0  

>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 539

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 318 ELITM*IDNKFYILITYISKNINKSILNC 232
           EL++   D KF+++ +Y   N++KSI +C
Sbjct: 322 ELLSQFRDAKFFVIKSYSEDNVHKSIKHC 350


>At3g12870.1 68416.m01604 expressed protein
          Length = 206

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/43 (23%), Positives = 28/43 (65%)
 Frame = +3

Query: 411 VYMYTYLFHYISIFINYHISNNRTTTSNIFFIRINLYRNVCPL 539
           +Y++ +LFH IS+ + +H S++ +++++    + +   ++C L
Sbjct: 64  LYIFFFLFHSISLLLLFHASSSSSSSASSSACKRSWIPSLCAL 106


>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
            synthase 1 nearly identical to callose synthase 1
            catalytic subunit [Arabidopsis thaliana] GI:13649388
          Length = 1922

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 643  IPLFIERAIN-SYIKYIQLSKKNLSKKYFTQL 551
            +P  +E A N SY+KY  ++  +  +KYF+QL
Sbjct: 958  VPSLLETAHNGSYVKYDVMTPLHQQRKYFSQL 989


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,701,485
Number of Sequences: 28952
Number of extensions: 210002
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)