Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0314
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    33   0.036
SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    33   0.048
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    29   0.59 
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    28   1.4  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   1.8  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   2.4  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   5.5  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.3  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   7.3  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.6  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.6  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 84  NVGHLTCLLCTSVVRSENVWQVHLNSKQHRENI 182
           N   + C++C    RS+N  + H NSK+H++N+
Sbjct: 266 NSNPIMCMVCNKNFRSQNQLENHENSKKHKKNL 298


>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 66  PLARYNNVGHLTCLLCTSVVRSENVWQVHLNSKQHRENIENAKKLK 203
           P    N++G   C LC +   +EN +  H   K+H+ N+   + L+
Sbjct: 44  PYLMKNHLGTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALE 89


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 102 CLLCTSVVRSENVWQVHLNSKQHRENIENAKK 197
           C +C     SE  +  H+ SK+HR+N+   ++
Sbjct: 72  CEVCNKKFYSEGAYSSHMASKKHRDNLSKFQR 103


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 368 HNEEIKRTPLNPVVITEKVN-EPVQTTDQKEKEEPASDVPIPEGFFDDQF*MQRFVRLNI 544
           H E   +  +  +   EKV  +PV TT+  +KE     V +P G   DQ   Q  V    
Sbjct: 40  HGESNAQEDVAEIAGLEKVQGKPVLTTNDLKKESNVFLVRLPPGMSADQI-SQLKVGSKP 98

Query: 545 KIQLKRNGKNS 577
            ++LK+  +N+
Sbjct: 99  TVELKQENENT 109


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 520 HLKLVIKKTFWYWYITCRFLFFFLICSLYRFINFFCYYNRIKWSSF--NFFIVKFYHTW 350
           HL++      + WY     + FF+I  ++    +   YN    S+F  N+ I KF   W
Sbjct: 563 HLQVFFMGNPFVWYSVISLVAFFVIVQIFCLARWNLGYNDFGPSAFHYNYNIGKFVVAW 621


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 508 VIKKTFWYWYITCRFLFFFLICSLYRFINFFCYYNRIKWSSFNFFIVK--FYHTWDII 341
           V   TF+  Y+T  F       +  R +   C++N I W   N F VK   ++T+DII
Sbjct: 35  VTTDTFYCKYLTASFTGLKKFPT-ERQLPLECHFNHIDWDLGNNFKVKEGVFYTFDII 91


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 442 SLYRFINFFCYYNRIKWSSFNFFIVKFYHTWDIIFGFCY 326
           S+  ++N F  Y R +WSS++    ++   W I    C+
Sbjct: 403 SVDSYLNSFEMYQR-RWSSYSIIYTQYAFQWQIFKNKCF 440


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 150 HLNSKQHRENIENAKKLKELTNNFTVVNKVKHKSSV 257
           HL+S + +E IENA K K+   +F    K++ KS +
Sbjct: 512 HLSSTKIQEMIENADKFKQQDKDF--AKKLEAKSQL 545


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 145 KYISIVNNIEKILKMLRN*RN*RIISL*STKLNTRVPSSKRCTSRKKDK 291
           KY  +    E+IL + R+  N + +   ST     VPS KR   R+K K
Sbjct: 74  KYARLERLQEQILNLERSLLNYKSLKSNSTTTVATVPSEKRYFFRRKPK 122


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -3

Query: 406 NRIKWSSFNFFIVKFYHTWDII----FGFCYHWHG 314
           N+IK S F FF+  FY+   II    F  C  + G
Sbjct: 5   NKIKHSIFQFFVFPFYYFLLIITEIGFSSCIQYSG 39


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 434 VQTTDQKEKEEPAS-DVPIPEGFFDDQF 514
           + +TD+  KE+ A  DVP+P G   D F
Sbjct: 82  ILSTDENRKEDIAVFDVPLPNGLQIDTF 109


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 488 PEGFFDDQF*MQRFVRLNIKIQLKRNGKNSE 580
           P GF D+Q  ++ FV +N+ +   R    S+
Sbjct: 385 PNGFLDEQLYIRYFVEMNVFVASLRRDSPSQ 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,040
Number of Sequences: 5004
Number of extensions: 42608
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)