Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0314
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 35 0.066
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133 32 0.46
12_02_0046 + 12830974-12832386 29 2.5
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 29 2.5
11_06_0610 - 25449085-25453284 29 4.3
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 29 4.3
08_01_1026 - 10366534-10368021,10368505-10368525 28 5.7
07_01_0118 + 898100-898233,898347-898779 28 5.7
04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866... 28 5.7
03_05_0799 + 27809301-27811550 28 5.7
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 28 7.5
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 7.5
12_02_1111 - 26157796-26160330 27 9.9
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742... 27 9.9
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 34.7 bits (76), Expect = 0.066
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 69 LARYNNVGHLTCLLCTSVVRSENVWQVHLNSKQHRE 176
L RYN C +C ++SE +W H S++H E
Sbjct: 29 LVRYNEFDQPICRICNVTLKSEALWPAHQVSRKHHE 64
>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
Length = 474
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 263 KDAPPEKKIKGILKXVGTVPVITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPVQT 442
KD G LK + V P +DVPSVV N ++ +P+ P + + P +
Sbjct: 133 KDTIEHATALGGLKATASSDVAPVPIDDVPSVVPAANAPVRSSPVMPA--ADAASAPGPS 190
Query: 443 TDQKEKEEPASD 478
T QK +EE + +
Sbjct: 191 T-QKHQEETSGN 201
>12_02_0046 + 12830974-12832386
Length = 470
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 PPKDAPPEKKIKGILKXVGTVPVITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPV 436
PP+ APP +++ L P T P P F E +P +P + + ++ P+
Sbjct: 318 PPRPAPPSRRVMAPLPPYPMDPFETPPSPHAPRHDPF---EPPPSP-DPPIQSYAIDPPI 373
Query: 437 QTTDQKEKEEPASDVPIPEGFFD-DQF 514
Q+ E+P S P G D D+F
Sbjct: 374 QSYAMDPFEQPPSPY-APHGVDDMDEF 399
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 257 PPKDAPPEKKIKGILKXVGTVPVITKPKNDVPSVVEFHNEEIKR 388
PP PP ++ G + P +T+ VP VVEF++ ++R
Sbjct: 292 PPPPPPPARRTSGAASPAASGPRVTR----VPEVVEFYHSLMRR 331
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/78 (24%), Positives = 26/78 (33%)
Frame = +2
Query: 257 PPKDAPPEKKIKGILKXVGTVPVITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPV 436
PPK PP +K + + P P+ PS + E K P+ P T
Sbjct: 706 PPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPPTPEE 765
Query: 437 QTTDQKEKEEPASDVPIP 490
T + P P P
Sbjct: 766 YTPSPPKSSPPEEKSPPP 783
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 145 CQTFSDLTTEVQSKQVRCPTLL 80
C T+ T+++Q++Q RCP ++
Sbjct: 332 CWTYKQFTSDIQTRQYRCPEVI 353
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 96 LTCLLCTSVVRSENVWQVHLNSKQHRE 176
LTC +C E Q HLN K H++
Sbjct: 51 LTCAVCGITSTGEKAMQDHLNGKSHKK 77
>07_01_0118 + 898100-898233,898347-898779
Length = 188
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 526 PLHLKLVIKKTFWYWYITCRF 464
PL L+L+ K+ +WY++ C F
Sbjct: 64 PLRLQLLPKEAYWYFFKVCTF 84
>04_04_0915 -
29385926-29385952,29386069-29386285,29386367-29386622,
29386745-29387072,29387157-29387587,29388014-29388163,
29388212-29388398,29388709-29388750,29389007-29389555,
29389778-29390032
Length = 813
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 114 TSVVRSENVWQVHLNSKQHRENIENAKKLKELTNNFTVVNKV 239
T++ S +VWQ +N +HR A + K L+N +VN V
Sbjct: 743 TTLSNSRSVWQKVVNDAKHRGCFFEASEYKHLSN--AIVNAV 782
>03_05_0799 + 27809301-27811550
Length = 749
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 311 GTVPVITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPVQTTDQKEKEEPASDVPIP 490
G + V+T+ N + S V E R+P V++T K + + ++KE P D +P
Sbjct: 197 GVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVVTSEKKEYPV-DPSLP 255
Query: 491 E 493
+
Sbjct: 256 D 256
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 96 LTCLLCTSVVRSENVWQVHLNSKQHRENIE 185
LTC +C + V ++H K+H++N+E
Sbjct: 278 LTCEVCKIQCDTPEVLRIHKTGKKHKKNLE 307
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 123 VRSENVWQVHLNSKQHRENIENAKKLKELTNNFTVVNKVKHKSSVLQKMHL 275
+ N + L K + IEN + +L +FTV+ ++++ S L+K L
Sbjct: 1081 ITRRNSYVDELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQTL 1131
>12_02_1111 - 26157796-26160330
Length = 844
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +2
Query: 257 PPKDAPPEKKIKGILKXVGTV--PVITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNE 430
PP AP +K+ + K G PV+TK N++ ++ ++ + T + V+
Sbjct: 244 PPPPAPAKKEQQRWSKKAGAKKGPVLTK--NELLAMRSEQEQDEQPTVVQKVIDMRGPQA 301
Query: 431 PVQTTDQK----EKEEPASDVPIPE 493
V TD K E+E A+DVP+PE
Sbjct: 302 RV-LTDLKGLNVEQEMEANDVPMPE 325
>02_05_1171 +
34672997-34673122,34673500-34673595,34674126-34674229,
34674303-34674502,34674643-34674765,34674910-34674998,
34675579-34675642,34675906-34676049,34676173-34676270,
34676479-34676724,34676826-34676909,34677011-34677022
Length = 461
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 407 VITEKVNEPVQTTDQKEKEEPASDVPIPE 493
VITE +P+Q + + E+ ASD P+P+
Sbjct: 136 VITED-GQPIQDPNSVDAEQQASDTPLPK 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,069
Number of Sequences: 37544
Number of extensions: 237373
Number of successful extensions: 700
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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