Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0314
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11342| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_55136| Best HMM Match : DUF520 (HMM E-Value=9.8) 33 0.27
SB_9723| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1) 32 0.47
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038) 32 0.47
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022) 32 0.47
SB_55137| Best HMM Match : hATC (HMM E-Value=0.059) 31 0.62
SB_50659| Best HMM Match : PCMT (HMM E-Value=1.8) 31 0.62
SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7) 31 0.62
SB_30965| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.6) 31 0.62
SB_6514| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.62
SB_48175| Best HMM Match : hATC (HMM E-Value=0.024) 31 0.62
SB_47551| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6) 31 0.62
SB_16944| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_20752| Best HMM Match : hATC (HMM E-Value=0.04) 29 2.5
SB_20704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3) 29 4.4
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 29 4.4
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_20937| Best HMM Match : hATC (HMM E-Value=0.04) 28 5.8
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_11342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSEN-VWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+N + HL SK+H E KK K
Sbjct: 60 GELFCLACREIVSSKNSILTTHLASKKHGNGKEKLKKSK 98
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSEN-VWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+N + HL SK+H E KK K
Sbjct: 309 GKLFCLACREIVSSKNSILTTHLASKKHGNGKEKLKKSK 347
>SB_55136| Best HMM Match : DUF520 (HMM E-Value=9.8)
Length = 158
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 87 VGHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
+G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 51 IGKLFCLACREIVSSKKSILTTHLASKKHGNGKEKQKKSK 90
>SB_9723| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)
Length = 387
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GELFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 98
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 311 GELFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 349
>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
Length = 676
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 158 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKYK 196
>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
Length = 865
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 115 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKYK 153
>SB_55137| Best HMM Match : hATC (HMM E-Value=0.059)
Length = 619
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKRKKSK 98
>SB_50659| Best HMM Match : PCMT (HMM E-Value=1.8)
Length = 398
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 98
>SB_41210| Best HMM Match : MAAL_N (HMM E-Value=0.7)
Length = 536
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 98
>SB_30965| Best HMM Match : Ribosomal_S9 (HMM E-Value=9.6)
Length = 140
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 34 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKRKKSK 72
>SB_6514| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 98
>SB_48175| Best HMM Match : hATC (HMM E-Value=0.024)
Length = 620
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 98
>SB_47551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 109 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 147
>SB_40860| Best HMM Match : MAAL_N (HMM E-Value=0.6)
Length = 538
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKRKKSK 98
>SB_16944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 60 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 98
>SB_3583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 31.5 bits (68), Expect = 0.62
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 GHLTCLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKLK 203
G L CL C +V S+ ++ HL SK+H E KK K
Sbjct: 59 GKLFCLACREIVSSKKSILTTHLASKKHGNGKEKLKKSK 97
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 66 PLARYNNVGHLTCLLCTSVVRSENVWQVHLN-SKQHRENIENAKKL 200
P A++ ++ + CLLC + S H+ S H++N+E KK+
Sbjct: 759 PSAQFTDLKLMACLLCKRQLPSREALDKHMQFSDLHKQNLEIHKKM 804
>SB_2252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 153 LNSKQHRENIENAKKLKELTNNFTVVN-KVKHKSSVLQKMHLPKK 284
++S Q REN+ NAK K TN ++ + + K +LQK P K
Sbjct: 54 IDSTQERENLANAKSCKGPTNTWSQAHYQYKGVPELLQKEPTPPK 98
>SB_20752| Best HMM Match : hATC (HMM E-Value=0.04)
Length = 578
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 CLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKL 200
C C VV + ++ +VH+ SK+H N E KKL
Sbjct: 92 CAACKEVVSVKMSIMKVHVKSKKHELNKEKLKKL 125
>SB_20704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 416 EKVNEPVQTTDQKEKEEPASDVPIPEGFFDD 508
E E Q +D+K+ +PEGFFDD
Sbjct: 38 ENQPETTQESDRKQSSNSKPSEDLPEGFFDD 68
>SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)
Length = 378
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 460 FFFLICSLYRFIN--FFCYYNRIKWSSFNFFIVKFYHTW 350
FF L+C+ ++++ F YNR + + F+ Y TW
Sbjct: 316 FFSLVCTCVQYVDIRFILLYNRHETLPQSLFLFSVYSTW 354
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 87 VGHLTCLLCTSVVRSENVWQVHLNSKQHRENIENAKKLKELTNNFTVVNK 236
+G C C + S + H+ S +HR+ ++ K K N VNK
Sbjct: 779 MGQYYCQDCDISMNSIKQMEQHMTSARHRDGLKGGAKRKNNRNKGASVNK 828
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 374 EEIKRTPLNPVVITEKVNEPVQTTDQKEKEEPASDVPIPEGFFDDQF 514
+ + TP+ P ITE + ++ K K +P S V P F D+++
Sbjct: 903 KSVPSTPVRPYDITESPIKALKNLASKSKHKPESTVDCPLMFDDNRW 949
>SB_20937| Best HMM Match : hATC (HMM E-Value=0.04)
Length = 606
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 102 CLLCTSVVRSE-NVWQVHLNSKQHRENIENAKKL 200
C C V+ + ++ +VH+ SK+H N E KKL
Sbjct: 92 CAACKEVLSVKMSIMKVHVKSKKHELNKEKLKKL 125
>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/57 (14%), Positives = 28/57 (49%)
Frame = -3
Query: 493 FWYWYITCRFLFFFLICSLYRFINFFCYYNRIKWSSFNFFIVKFYHTWDIIFGFCYH 323
++Y+Y + +++ Y + +++ YY + + ++ +Y+ + + + YH
Sbjct: 109 YYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYH 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,379
Number of Sequences: 59808
Number of extensions: 293339
Number of successful extensions: 1214
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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