Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0314
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02860.2 68416.m00279 expressed protein 46 2e-05
At3g02860.1 68416.m00278 expressed protein 46 2e-05
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 33 0.13
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 29 2.1
At3g31410.1 68416.m04010 hypothetical protein similar to hypothe... 29 2.7
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 29 2.7
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 29 3.6
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 3.6
At3g53030.1 68416.m05845 protein kinase family protein contains ... 29 3.6
At5g22840.1 68418.m02670 protein kinase family protein contains ... 28 4.8
At3g44850.1 68416.m04832 protein kinase-related contains eukaryo... 28 4.8
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 28 4.8
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 28 4.8
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 28 4.8
At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid... 28 4.8
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 28 6.3
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest... 28 6.3
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest... 28 6.3
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 27 8.3
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 66 PLARYNNVGHLTCLLCTSVVRSENVWQVHLNSKQHRENIENAK 194
PL RYN C +C V++SE++W VH S++H E I++ K
Sbjct: 27 PLVRYNESDQPVCRVCNVVLKSESLWDVHQASRKHHEAIDSLK 69
>At3g02860.1 68416.m00278 expressed protein
Length = 312
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 66 PLARYNNVGHLTCLLCTSVVRSENVWQVHLNSKQHRENIENAK 194
PL RYN C +C V++SE++W VH S++H E I++ K
Sbjct: 27 PLVRYNESDQPVCRVCNVVLKSESLWDVHQASRKHHEAIDSLK 69
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 96 LTCLLCTSVVRSENVWQVHLNSKQHRENIENAKK 197
L C++C+ +SE W+ H SK+H+E + ++
Sbjct: 308 LYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELRE 341
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 102 CLLCTSVVRSENVWQVHLNSKQHRENIE--NAKKLKELTNNFTVVNKVKHKSSVLQ 263
C LC SE H N K+HR +E +A++ K + + V+K + ++
Sbjct: 156 CSLCDINATSEQTLLAHANGKKHRVKVERFDAEQQKRQSTQHSTVDKKDYSKQQIE 211
>At3g31410.1 68416.m04010 hypothetical protein similar to
hypothetical protein GB:CAB77996 GI:7267513 from
[Arabidopsis thaliana]
Length = 315
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 272 PPEKKIKGILKXVGTVPV-ITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPVQT 442
PP +K G+ + GT TKP + + + EE T NP ++ V EP+ T
Sbjct: 2 PPLRKKTGLKRRRGTTEEPTTKPIDGGTTEDQTTTEEPSSTKQNPAIVGGGVEEPIPT 59
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 66 PLARYNNVGHLTCLLCTSVVRSENVWQVHLNSKQHRENI 182
P N++G C LC ++ +E + H K+H+ N+
Sbjct: 42 PYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNL 80
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +2
Query: 299 LKXVGTVPVITKPKNDVPSVVEFHNEEIK-RTPLNPV--VITEKVNEPVQTTDQKEKEEP 469
++ +G P P++D S + EE++ R + I EK N P + +K E P
Sbjct: 328 MREIGYPPGYLAPEDDHLSGITIFGEEVETREEIESEDGEILEKANHPPEPQMKKTVEFP 387
Query: 470 ASDVPIPE 493
+ P PE
Sbjct: 388 GINAPFPE 395
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +2
Query: 263 KDAPPEKKIKGILKXVGTVPVITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPVQT 442
KD+ EKKI+ + ++ V ++++ VV F NE++K + TE++++ QT
Sbjct: 866 KDSLAEKKIEELSNLNKSLLV---KESELQDVV-FENEKLKSKEALSLKTTEELSDVKQT 921
Query: 443 TDQKEKE 463
KEKE
Sbjct: 922 LADKEKE 928
>At3g53030.1 68416.m05845 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 529
Score = 28.7 bits (61), Expect = 3.6
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 145 CQTFSDLTTEVQSKQVRCPTLL 80
C T+ T+++Q++Q RCP ++
Sbjct: 315 CWTYKQFTSDIQTRQYRCPEVI 336
>At5g22840.1 68418.m02670 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 538
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 145 CQTFSDLTTEVQSKQVRCPTLL 80
C T+ T+++Q++Q RCP ++
Sbjct: 319 CWTYKQFTSDIQTRQYRCPEVV 340
>At3g44850.1 68416.m04832 protein kinase-related contains eukaryotic
protein kinase domain, INTERPRO:IPR000719
Length = 534
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 145 CQTFSDLTTEVQSKQVRCPTLL 80
C T+ T+++Q++Q RCP ++
Sbjct: 330 CWTYKQFTSDIQTRQYRCPEVV 351
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 28.3 bits (60), Expect = 4.8
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = -3
Query: 541 IQSYEPLHLKLVIKKTFWYWYITCRFLFFFLICSLYRFINFFCYYNRIKWSSFNFFIVKF 362
IQ P HLK+ IK+ F T + + F S +FINFF Y +I +S + + V
Sbjct: 19 IQQIFPNHLKIAIKEFF---LSTIQQISFAKRFS-DKFINFFSPYVQINFSEYEDYRVN- 73
Query: 361 YHTWDII 341
H +D I
Sbjct: 74 -HAFDPI 79
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 323 VITKPKNDVPSVVEFHNEEIKRTPLNPVVITEKVNEPVQTTDQKEKEEPASDVPIP 490
+I K + VVE +++ K + + EKV Q +D + K+E DVP P
Sbjct: 460 IIEKAITEEKHVVEEPSKDEKTSESGSALSPEKVVPTNQDSDTEPKKETEGDVPSP 515
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +3
Query: 87 VGHLTCLLCTSVVRSENVWQVHLNSKQHRENIENAKK 197
+G CLLC + +V H +K+H++ ++ ++
Sbjct: 135 MGQFNCLLCHRNFSNASVMDYHFKTKKHKKRVKKIER 171
>At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid
transport family protein contains Pfam profile PF03595:
C4-dicarboxylate transporter/malic acid transport
protein
Length = 556
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 475 TCRFLFFFLICSLYRFINFFCYYN-RIKWSSFNF 377
TC F+ FL SL INFF + + W S+ F
Sbjct: 417 TCFFIALFLYISLVARINFFTGFKFSVAWWSYTF 450
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 96 LTCLLCTSVVRSENVWQVHLNSKQHRENIENAKKLKELTNNFTVVNKVKHKSSVLQKMHL 275
L C +C + + ++ H K+HR N+E L+ + +V + VL+K ++
Sbjct: 297 LLCKVCQISFTNNDTYKNHTYGKKHRNNLE----LQSGKSKNILVGPAEPSKEVLEKHNM 352
Query: 276 PKK 284
KK
Sbjct: 353 NKK 355
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 102 CLLCTSVVRSENVWQVHLNSKQHRENIENAK 194
CL+C V +S+ V+ HL K+H + ++
Sbjct: 370 CLMCNVVCQSQIVFNSHLRGKKHANMLSQSE 400
>At3g14890.2 68416.m01883 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 638
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 374 EEIKRTPLNPVV-ITEKVNEPVQTTDQKEKEEPASD 478
EE K+ +PV + E+ EP + + +E ++PASD
Sbjct: 218 EETKKGKHSPVAKLVEQPGEPAKEDEDEESKKPASD 253
>At3g14890.1 68416.m01882 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 694
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 374 EEIKRTPLNPVV-ITEKVNEPVQTTDQKEKEEPASD 478
EE K+ +PV + E+ EP + + +E ++PASD
Sbjct: 274 EETKKGKHSPVAKLVEQPGEPAKEDEDEESKKPASD 309
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 145 CQTFSDLTTEVQSKQVRCPTLLYLARG*SNFT 50
C+++SD +SK R PT + + RG FT
Sbjct: 70 CKSYSDFDISFKSKPGRLPTFVLIDRGDCYFT 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,390,077
Number of Sequences: 28952
Number of extensions: 210215
Number of successful extensions: 815
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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