Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0313
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.62 
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   1.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    28   1.1  
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   1.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.5  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   5.8  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    26   5.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   7.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -3

Query: 312  HRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSPHHFH 160
            H   +P  +    AS A   ++  R +S+  RH    S    S+   HH H
Sbjct: 1260 HSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHH 1310


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 335 VSRDIRTTTEARRPGTARNTRRPK 264
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 294 RHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSPHH 166
           + ++K +   AD V      R +  R  N P  P W+ R+ HH
Sbjct: 865 KRNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 335 VSRDIRTTTEARRPGTARNTRRPK 264
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 336 REQGHQDHHRGPAPRHSE-KHSASE-ADRVSACCRERSETPRHRNKPSRPVWSRRSP 172
           RE  H   HR    RH E KH   + ++R S+  RE  +  RH      P+  ++ P
Sbjct: 20  RETNHSRRHRHHHSRHRESKHGRHDRSERPSS--REAGDRSRHERFSKEPLEVKKLP 74


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = -3

Query: 309 RGPAPRHSEKHSA---SEADRVSACCRERSETPRHRNKPSRPVWSRRSPHHFHCS 154
           R P+P  +   S      +DR S   R RS +     +   P + RRSP   H S
Sbjct: 116 RSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKRNHRS 170


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 300 APRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSP 172
           AP+ +   +++E  R +     R   P HR  P R VW +  P
Sbjct: 61  APKFAPAKTSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYP 103


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 483 SWRLSALLAKELELDHSRALSKSRLSSW 400
           SW LS ++ KEL++       +  L SW
Sbjct: 694 SWSLSEIVLKELDIKRQDINQEKALQSW 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,263
Number of Sequences: 5004
Number of extensions: 43472
Number of successful extensions: 113
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)