Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0313
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    32   0.49 
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993...    32   0.49 
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071...    31   0.64 
07_03_1670 - 28505732-28506426,28508202-28509309                       31   1.1  
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    29   3.4  
12_02_1275 - 27482784-27483272                                         28   6.0  
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295...    28   6.0  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    28   7.9  

>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -3

Query: 339 SREQGHQDHHRGPAPR----HSEKHSASEADRVSACCRERSETPRHRNKPSRPVWS 184
           SR  G     R P+P      S +H +   DR S   R RS  PR R  P R +WS
Sbjct: 305 SRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPI-RRRSPLPRRRLTPPRRMWS 359


>03_06_0034 +
           31197846-31198417,31198562-31198987,31199074-31199386,
           31199510-31199560
          Length = 453

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 262 RQSERLLPGALRDAPSPE*TFSTCLVSTESTPF 164
           R S+RL+  ALR  PSP   F++ L    +TPF
Sbjct: 37  RPSQRLVYAALRSLPSPRALFASLLSQLSATPF 69


>04_03_0665 -
           18506221-18506271,18506331-18506401,18507097-18507169,
           18507476-18507805
          Length = 174

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 161 WKWCGLRRDQTGREG 205
           W WCGLRR + GR G
Sbjct: 65  WMWCGLRRSKAGRRG 79


>07_03_1670 - 28505732-28506426,28508202-28509309
          Length = 600

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 445 LQLFGQQRRESP*WPSVSATAKLQQQVVNKILERKD 552
           L+ +G+ RR  P W S S   +LQQQV   ++  KD
Sbjct: 238 LEGYGRVRRGFPSWVSASDRRRLQQQVAADVVVAKD 273


>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 333 EQGHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSP 172
           E+   DH   P  R + + S S+  R  A    RS +PR+   PS      RSP
Sbjct: 247 ERNGSDHGDSPRGRENSR-SPSDGYRSPAAANGRSPSPRNNGSPSPMDNGSRSP 299


>12_02_1275 - 27482784-27483272
          Length = 162

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 158 QWKWCGLRRDQTGREG 205
           +W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159


>02_05_1044 +
           33728623-33728768,33728814-33728993,33729446-33729523,
           33729834-33729930,33730206-33730339,33730944-33731025,
           33731631-33731717,33731875-33731981,33732674-33732845,
           33733018-33733259,33733482-33733563,33733954-33734019,
           33734040-33734159,33734935-33735012,33735083-33735178,
           33735791-33735897,33736031-33736199,33736402-33736452,
           33736567-33736650,33736946-33737040,33737175-33737265,
           33737342-33737488,33737614-33737676
          Length = 857

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 491 LGHHGDSRRCWPKSWSLTIAGHLASRD 411
           L    D +  WP  W ++ AGH+++ D
Sbjct: 76  LQRRADCKDTWPGQWDISSAGHISAGD 102


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -3

Query: 312 HRGPAPRHSEKHSASEADRVSACCRERSET----PRHRNKPSRPVWSRRS 175
           +R P+PRHS   S +E  R     R RS      P HRN  S PV   RS
Sbjct: 493 YRRPSPRHSRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNS-SPPVNRGRS 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,028,202
Number of Sequences: 37544
Number of extensions: 352378
Number of successful extensions: 1118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)