Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0313
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  28   8.0  

>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 357  TLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPS 199
            T+  V+  E+  +D  +GP  R  + H       V    R+RS  P +R   S
Sbjct: 1092 TIALVERLEEVERDGRQGPDSRRRQTHERRGGKEVREAIRDRSSQPDYRRADS 1144


>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
 Frame = -3

Query: 342 QSREQGHQD---HHRGPAP------RHSEKHSASEADRVSACCRERSETPRHRNKPSRPV 190
           +  E+ H++   HHR  +P      R   + S S A    +  R RS +PR R +   P 
Sbjct: 182 EEEEEEHKESPVHHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPR 241

Query: 189 WSRR----SPHH 166
             RR    SPHH
Sbjct: 242 RRRRSRSPSPHH 253



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -3

Query: 342 QSREQGHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSPHHF 163
           +SR +  +   R  +PR   +  +      S   R RS +PR R+  SR    RR     
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284

Query: 162 H 160
           H
Sbjct: 285 H 285


>SB_49940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 569

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 324 HQDHHRGPAPRHSEKHSASEADRV 253
           H  HH     RH  KH+A  A RV
Sbjct: 167 HPSHHHVTKSRHQTKHNAKHATRV 190


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 309 RGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSPH 169
           R P  R   K  +    R S+ CR R    R R+  SR     RSP+
Sbjct: 293 RSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPY 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,535
Number of Sequences: 59808
Number of extensions: 394715
Number of successful extensions: 1221
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)