Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0313
         (677 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    27   0.72 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    25   1.7  
AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsi...    25   2.2  
DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    23   6.7  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    23   8.9  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 26.6 bits (56), Expect = 0.72
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 167 WCGLRRDQTGREG-LFR*RG-VSERSR-QQALTLSASDAECFSLCLGAGPLWW 316
           W G  +D+    G +F   G +S  +R QQ +TLS+++AE  +L      L W
Sbjct: 792 WAGDHQDRKSNSGFIFHLGGPISWSARKQQCVTLSSTEAEYVALAEACRELLW 844


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +1

Query: 316 VLMSLLTALHRPEGDRRGCEPRYPGHPQPRRQSRLAKCPAMVKLQLFGQQRRESP 480
           VL SLL A  +  G +    PR P  P PRR S  A+     + Q   Q  +E P
Sbjct: 183 VLNSLLAA--KVGGGQPSASPRQPPTPLPRRSS--AQPQQQQQQQQRNQHEQEQP 233



 Score = 24.6 bits (51), Expect = 2.9
 Identities = 19/79 (24%), Positives = 36/79 (45%)
 Frame = +1

Query: 286 AVPGRRASVVVLMSLLTALHRPEGDRRGCEPRYPGHPQPRRQSRLAKCPAMVKLQLFGQQ 465
           A+   R  VV  ++    + R    +   +PR    PQ ++Q R  +  A+   Q   QQ
Sbjct: 248 ALTAVRGDVVPELTYSEVVRRRYRGKATGKPRSQQQPQQQQQQRQLQRQAVGIAQHQQQQ 307

Query: 466 RRESP*WPSVSATAKLQQQ 522
           ++  P   +V+ + + QQ+
Sbjct: 308 QQRQPQRQAVAGSQQQQQE 326


>AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsive
           serine proteaselike protein protein.
          Length = 600

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 303 PAPRHSEKHSASEADRVSACCRERSETPRHRNKP 202
           P     +  +A+ +D    CC +RSE    RN+P
Sbjct: 47  PDQEQLDLRAATCSDATHYCCPDRSEQLPSRNRP 80


>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 444 APALWPAAPRVS 479
           AP+LWP A R+S
Sbjct: 102 APSLWPPAERIS 113


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -3

Query: 333 EQGH-QDHHRGPAPRHSEKHSASEA 262
           + GH + HH+     H   HSA EA
Sbjct: 223 DSGHMRSHHQHYTANHQNGHSAPEA 247


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,314
Number of Sequences: 2352
Number of extensions: 12183
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)