Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0313
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 31 0.57
U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protei... 31 0.57
U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protei... 31 0.57
U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protei... 31 0.57
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 31 0.76
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 29 2.3
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 29 2.3
U70844-3|AAB09093.2| 209|Caenorhabditis elegans Hypothetical pr... 29 4.0
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical... 28 7.0
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 7.0
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 27 9.3
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 9.3
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 27 9.3
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 342 QSREQGHQDHHRGPAPRH-SEKHSASEADRVSACCRERSETPRHRNKPSRP 193
Q+ H HH PAPRH S H E S+ R +S +P N+ RP
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIETISGSSKLRAQSGSPA-LNRKKRP 80
>U42843-3|AAM75365.1| 310|Caenorhabditis elegans Skinhead protein
1, isoform b protein.
Length = 310
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 297 PRHSEKHSASEA--DRVSACCRERSETPRHRNKPS 199
P HS++HS S+ D S C R SE+PR+ ++ S
Sbjct: 150 PYHSQRHSFSDCTTDSSSTCSRLSSESPRYTSESS 184
>U42843-2|AAM75366.1| 533|Caenorhabditis elegans Skinhead protein
1, isoform c protein.
Length = 533
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 297 PRHSEKHSASEA--DRVSACCRERSETPRHRNKPS 199
P HS++HS S+ D S C R SE+PR+ ++ S
Sbjct: 373 PYHSQRHSFSDCTTDSSSTCSRLSSESPRYTSESS 407
>U42843-1|AAA83594.2| 623|Caenorhabditis elegans Skinhead protein
1, isoform a protein.
Length = 623
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 297 PRHSEKHSASEA--DRVSACCRERSETPRHRNKPS 199
P HS++HS S+ D S C R SE+PR+ ++ S
Sbjct: 463 PYHSQRHSFSDCTTDSSSTCSRLSSESPRYTSESS 497
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 348 AVQSREQGHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRN 208
A Q++EQ HQ HH+ P+ + S E C +R + H N
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS-QEGSLPKMSCSQRDDKSCHAN 371
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 338 AVSRDIRTTTEARRPGTARNTRRPKPTE*ALAAGSA 231
+ S + T++ ARRP TA+ PT A AA +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAA 207
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 338 AVSRDIRTTTEARRPGTARNTRRPKPTE*ALAAGSA 231
+ S + T++ ARRP TA+ PT A AA +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAA 207
>U70844-3|AAB09093.2| 209|Caenorhabditis elegans Hypothetical
protein ZK154.1 protein.
Length = 209
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 554 LSLRSKILFTTCCCSLAVAETLGHHGDSRRCWPKSWSLTIAG 429
L L SK L CC SLA G + W + S+++ G
Sbjct: 73 LLLNSKSLMVLCCASLATRVETDSSGREKCIWRDTESISVLG 114
>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform c
protein.
Length = 1310
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 177 SVETKQVEKVYSGDGASLSAPGSKRSLCRLRTPSVSRCAWAPGL 308
S+ ++ E G +S+ +PGS + P + R + APG+
Sbjct: 1184 SIHSEDTESTDYGASSSMYSPGSSNRISSQVDPPIGRLSSAPGI 1227
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 177 SVETKQVEKVYSGDGASLSAPGSKRSLCRLRTPSVSRCAWAPGL 308
S+ ++ E G +S+ +PGS + P + R + APG+
Sbjct: 2330 SIHSEDTESTDYGASSSMYSPGSSNRISSQVDPPIGRLSSAPGI 2373
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 297 PRHSEKHSASEADRVSACCRERSETPRHRNKPSRP-VWSRRS 175
PR +++H + R S R RS TP R SR SRRS
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRS 117
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 297 PRHSEKHSASEADRVSACCRERSETPRHRNKPSRP-VWSRRS 175
PR +++H + R S R RS TP R SR SRRS
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRS 117
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 297 PRHSEKHSASEADRVSACCRERSETPRHRNKPSRP-VWSRRS 175
PR +++H + R S R RS TP R SR SRRS
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDRKRSRRS 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,456
Number of Sequences: 27780
Number of extensions: 277036
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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