Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0313
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.1
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.1
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 29 3.7
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 3.7
At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ b... 28 6.5
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam... 28 6.5
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 28 6.5
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 8.6
At3g08670.1 68416.m01007 expressed protein 27 8.6
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 27 8.6
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 27 8.6
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 282 KHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSPHH 166
+ + DR + R RS +P +R +PS RRSP +
Sbjct: 140 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 282 KHSASEADRVSACCRERSETPRHRNKPSRPVWSRRSPHH 166
+ + DR + R RS +P +R +PS RRSP +
Sbjct: 166 REAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEY 204
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 283 LAVPGRRASVVVLMSLLTALHRPEGDRRGC 372
L G + SV+ + LLT H EG RRGC
Sbjct: 137 LGSQGLKLSVMQDIDLLTRTHMEEGARRGC 166
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -3
Query: 351 RAVQSREQGHQDHHRG---PAPRHSEKHSASEADRVSACCRERSETPRHRNKPSR 196
R V +E+GH++H R R E+ + +R RER E R + R
Sbjct: 114 RRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREEREKER 168
>At3g58190.1 68416.m06488 LOB domain protein 29 / lateral organ
boundaries domain protein 29 (LBD29) identical to
SP|Q9M2J7 LOB domain protein 29 {Arabidopsis thaliana};
supported by full-length cDNA gi:17227167
Length = 218
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 424 KCPAMVKLQLFGQQRRESP*WPSVSATAKLQQQVVN 531
+C A + + Q R + P + VS LQQQVVN
Sbjct: 65 RCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVN 100
>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
NUDIX domain [PF00293]; very low similarity to Chain A
and Chain B of Escherichia coli isopentenyl
diphosphate:dimethylallyl diphosphate isomerase
[gi:15826361] [gi:15826360]
Length = 772
Score = 27.9 bits (59), Expect = 6.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 476 DSRRCWPKSWSLTIAGHLASRD 411
D + WP W ++ AGH+++ D
Sbjct: 54 DDKDSWPGQWDISSAGHISAGD 75
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Frame = -3
Query: 342 QSREQGHQDHHRGPAPRHSEK-------HSASEADRVSACCRERSETPRHRNKP---SRP 193
+ R++ H+D HR + SEK H DR R+R RHR + SR
Sbjct: 98 RQRDRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRS 157
Query: 192 VWSRRS-PHHFHCS 154
RRS H H S
Sbjct: 158 RSERRSRSEHRHKS 171
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 90 LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSLCRLR 269
L +++ T Q+ + SS Y N + + T + +K + +SLS+ S+ + R
Sbjct: 444 LEMNRETESPQKHSSLSSDDDYNNDQSMPIIRTPESQKKKTSSSSSLSSLSSEEDIICER 503
Query: 270 TPSVS 284
TP +
Sbjct: 504 TPETT 508
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 327 GHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSR 196
G+ H AP+ + AS A + S +SE+ H ++P+R
Sbjct: 110 GNDSHSSLAAPKIASSARASSASKASRLSVSQSESGYHSSRPAR 153
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 339 SREQGHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSR 181
SR G + R P+PR S S S V +E S++P + P+ +R
Sbjct: 250 SRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ---KEGSKSPSKPSPAKSPIHTR 299
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -3
Query: 339 SREQGHQDHHRGPAPRHSEKHSASEADRVSACCRERSETPRHRNKPSRPVWSR 181
SR G + R P+PR S S S V +E S++P + P+ +R
Sbjct: 250 SRSPGPRSKSRSPSPRRSRSRSRSPLPSVQ---KEGSKSPSKPSPAKSPIHTR 299
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,591
Number of Sequences: 28952
Number of extensions: 256000
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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