Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0312
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   132   5e-32
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    98   1e-21
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    32   0.081
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.3  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   5.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.3  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    25   9.3  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  132 bits (318), Expect = 5e-32
 Identities = 57/83 (68%), Positives = 67/83 (80%)
 Frame = +1

Query: 244 SCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYL 423
           S   ACHKGWG S++IGVAAAG+EISTRPFQLVTGR W+G AFGG K R  +P LV EYL
Sbjct: 282 SALEACHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYL 341

Query: 424 EKKLPLDEFVTHNVPLKEINEAF 492
           + KL +D+++TH  PLKEINEAF
Sbjct: 342 DHKLEIDKYITHRRPLKEINEAF 364



 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = +2

Query: 68  RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRA 247
           RI G+D+NP+K   A  FG  +F+NP D   PIQ VL+  TDGGL++TF+C GNV  MR+
Sbjct: 223 RIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVLIHETDGGLDWTFDCTGNVHVMRS 282

Query: 248 ALE 256
           ALE
Sbjct: 283 ALE 285


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 42/78 (53%), Positives = 55/78 (70%)
 Frame = +1

Query: 259 CHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLP 438
           CHKGWG   +IGVAAAG+ +  RPF +VTGR   G+AFGG K R  +P  VDEY++    
Sbjct: 283 CHKGWGKLCVIGVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFK 342

Query: 439 LDEFVTHNVPLKEINEAF 492
           +DE++T+  PLK IN+AF
Sbjct: 343 VDEYITNEEPLKNINKAF 360



 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 29/64 (45%), Positives = 43/64 (67%)
 Frame = +2

Query: 65  NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
           +RII +DIN DK   AKKFG  +F++     K + Q ++D+TDGG++Y F+C GNV  M+
Sbjct: 219 SRIIAIDINADKEVYAKKFGATDFIDSSKV-KDLVQYVIDVTDGGVDYAFDCTGNVTVMQ 277

Query: 245 AALE 256
             L+
Sbjct: 278 QELQ 281


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 31.9 bits (69), Expect = 0.081
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 68  RIIGVDINPDKFEVAKKFGVNEFVNP 145
           R++G+D +PD  + A++ G+N +V P
Sbjct: 57  RVVGIDASPDMIKAARELGLNAYVIP 82


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 368 AVPFQVRPVTSWNGRVLISSPAAATPMIT 282
           +VP+   PVTS N  +  S+P  +TP+ T
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 529



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 368 AVPFQVRPVTSWNGRVLISSPAAATPMIT 282
           +VP+   PVTS N  +  S+P  +TP+ T
Sbjct: 560 SVPYTSTPVTSSNYTISSSTPVTSTPVTT 588


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 274 GVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGG 378
           G  V+IG +  G E++    + +T  T  G   GG
Sbjct: 110 GALVVIGTSLGGHELTNGGKEFITSATSLGALLGG 144


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = +3

Query: 294 CSCCW---RRDQHSSIPTCYRSHLEGNSFWR 377
           C  CW   + D +   P C R + E N  WR
Sbjct: 42  CRFCWHHIKEDLNGRCPACRRLYTEENVQWR 72


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 430  SSPSTHLQALVH-FLYFCNLQKLFPSRCD 347
            SSPS+ L+     F Y CN+ KL+  + D
Sbjct: 914  SSPSSDLEVKQQAFTYVCNISKLYVYKSD 942


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 555  IYTIFVHLLNLFSSAFTTS 611
            IYT+F HLLN++      S
Sbjct: 1720 IYTLFEHLLNIYKETINDS 1738


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 184 IHQYLLNWFIIILRVDKFIDSKFLSYLKLVR 92
           +H  L +W +I+    +  DS  LSY+++ R
Sbjct: 185 LHSSLSSWMMILESSKEIKDSTLLSYMQISR 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,271
Number of Sequences: 5004
Number of extensions: 49232
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)