Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0312
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 132 2e-31
11_01_0689 - 5678227-5678343,5678475-5678636,5678751-5678846,567... 97 8e-21
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 91 5e-19
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 91 9e-19
03_01_0633 - 4649267-4649383,4649480-4649641,4649735-4649895,465... 86 3e-17
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 80 1e-15
07_03_1306 - 25643469-25643609,25644008-25644169,25644496-256446... 75 6e-14
10_01_0343 - 3773274-3773390,3773476-3773637,3773758-3773853,377... 65 5e-11
03_01_0636 - 4664472-4664588,4664695-4664856,4664984-4665061,466... 59 3e-09
05_03_0648 + 16563147-16565557,16565655-16565850 29 2.4
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 29 3.1
12_01_0849 + 7948693-7948996,7949829-7950610 29 4.1
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 28 5.5
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 28 5.5
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 132 bits (319), Expect = 2e-31
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +1
Query: 244 SCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYL 423
S CHKGWG SVI+GVAA+G+EISTRPFQLVTGR WKGTAFGG+KSR VP LV++YL
Sbjct: 282 SALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYL 341
Query: 424 EKKLPLDEFVTHNVPLKEINEAFHL 498
K++ +DE+VTH++ L +IN+AF L
Sbjct: 342 NKEIKVDEYVTHSMNLTDINKAFDL 366
Score = 110 bits (265), Expect = 8e-25
Identities = 48/64 (75%), Positives = 58/64 (90%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIG+DI+ KF+VAK FGV EFVNPKD+DKPIQQV+VDLTDGG++Y+FECIGNV MR
Sbjct: 222 SRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMR 281
Query: 245 AALE 256
+ALE
Sbjct: 282 SALE 285
>11_01_0689 -
5678227-5678343,5678475-5678636,5678751-5678846,
5679345-5679406,5679648-5679723,5679847-5679929,
5680525-5680853,5681402-5681448,5681707-5681843,
5682093-5682126
Length = 380
Score = 97.5 bits (232), Expect = 8e-21
Identities = 41/70 (58%), Positives = 56/70 (80%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIGVD+NP KFE+AKKFG +FVNPKDYDKP+QQV++++T+GG++ + EC GN M
Sbjct: 221 SRIIGVDLNPAKFELAKKFGCTDFVNPKDYDKPVQQVIIEMTNGGVDRSVECTGNAAAMI 280
Query: 245 AALELAIRDG 274
+A E + DG
Sbjct: 281 SAFE-CVHDG 289
Score = 87.4 bits (207), Expect = 8e-18
Identities = 38/85 (44%), Positives = 52/85 (61%)
Frame = +1
Query: 244 SCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYL 423
S H GWGV+V++GVA T P + RT +GT FG YK R +P +V+ Y+
Sbjct: 281 SAFECVHDGWGVAVLVGVAGKDAAFKTHPTNFLNERTLRGTFFGNYKPRTDLPGVVEMYM 340
Query: 424 EKKLPLDEFVTHNVPLKEINEAFHL 498
K+L L++F+TH+VP EIN AF L
Sbjct: 341 NKELELEKFITHSVPFSEINTAFDL 365
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 91.5 bits (217), Expect = 5e-19
Identities = 38/85 (44%), Positives = 54/85 (63%)
Frame = +1
Query: 244 SCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYL 423
SC H GWGV+V++GV + T P + +T KGT FG YK R +P +V+ Y+
Sbjct: 280 SCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPNVVELYM 339
Query: 424 EKKLPLDEFVTHNVPLKEINEAFHL 498
+K+L L++F+TH+VP EIN AF L
Sbjct: 340 KKELELEKFITHSVPFSEINTAFDL 364
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/70 (54%), Positives = 52/70 (74%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIGVD+NP KFE AKKFG +FVNPKD+ KP+ +VL+++T+GGL+ EC GN+ M
Sbjct: 220 SRIIGVDLNPAKFEQAKKFGCTDFVNPKDHSKPVHEVLIEMTNGGLDRAVECTGNINAMI 279
Query: 245 AALELAIRDG 274
+ E + DG
Sbjct: 280 SCFE-CVHDG 288
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 90.6 bits (215), Expect = 9e-19
Identities = 38/70 (54%), Positives = 54/70 (77%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIG+D+N ++FE A+KFG EFVNPKD+DKP+QQVL ++T+GG++ + EC GN+ M
Sbjct: 220 SRIIGIDLNANRFEEARKFGCTEFVNPKDHDKPVQQVLAEMTNGGVDRSVECTGNINAMI 279
Query: 245 AALELAIRDG 274
A E + DG
Sbjct: 280 QAFE-CVHDG 288
Score = 88.2 bits (209), Expect = 5e-18
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +1
Query: 262 HKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL 441
H GWGV+V++GV E T P + RT KGT FG YK R +P +V+ Y++K+L +
Sbjct: 286 HDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEV 345
Query: 442 DEFVTHNVPLKEINEAFHL 498
++F+TH+VP EIN AF L
Sbjct: 346 EKFITHSVPFSEINTAFDL 364
>03_01_0633 -
4649267-4649383,4649480-4649641,4649735-4649895,
4650056-4650080,4650155-4650237,4650332-4650704
Length = 306
Score = 85.8 bits (203), Expect = 3e-17
Identities = 36/82 (43%), Positives = 55/82 (67%)
Frame = +1
Query: 253 RACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKK 432
R+ +GWG ++I+GV G +S +++ G+ G+ FGG K ++ +P L D+YL K+
Sbjct: 210 RSSREGWGKTIILGVEMHGAPLSIPSLEILNGKCVMGSLFGGVKPKQDIPILADKYLNKE 269
Query: 433 LPLDEFVTHNVPLKEINEAFHL 498
L LD+F+TH VPLK+IN AF L
Sbjct: 270 LELDKFITHEVPLKDINTAFDL 291
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 113 KKFGVNEFVNPKDY-DKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALELAIRDG 274
KKFGV F+NP++ DKP+ Q ++++TDGG +Y FECIG M A + R+G
Sbjct: 162 KKFGVTHFINPQELGDKPVSQAIIEMTDGGADYCFECIGLASVMSDAFR-SSREG 215
>02_05_0070 - 25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 80.2 bits (189), Expect = 1e-15
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 71 IIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRAA 250
IIGVD NP+K E K FGV +F+NP++ ++P+QQV+ LT+GG +Y+FEC+G+ G + A
Sbjct: 837 IIGVDTNPEKQEKGKAFGVTDFINPEELNEPVQQVVKRLTNGGADYSFECVGDTGVVSTA 896
Query: 251 LE 256
L+
Sbjct: 897 LQ 898
Score = 78.2 bits (184), Expect = 5e-15
Identities = 33/82 (40%), Positives = 54/82 (65%)
Frame = +1
Query: 253 RACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKK 432
++C GWG++V +GV A E+S L++GRT KG+ FGG++ + +P LVD+Y K+
Sbjct: 898 QSCSDGWGLTVTLGVPKAKPEVSAHYALLLSGRTLKGSLFGGWRPKSDLPLLVDKYANKE 957
Query: 433 LPLDEFVTHNVPLKEINEAFHL 498
+ +D+ VTH++ IN+A L
Sbjct: 958 IQVDDLVTHDLSFDYINKALEL 979
>07_03_1306 -
25643469-25643609,25644008-25644169,25644496-25644659,
25645117-25645192,25645569-25645651,25646393-25646669
Length = 300
Score = 74.5 bits (175), Expect = 6e-14
Identities = 31/82 (37%), Positives = 52/82 (63%)
Frame = +1
Query: 253 RACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKK 432
++ GWG ++++GV+ IS +++ GR+ G+ FGG K + +P L +YL+K+
Sbjct: 196 QSTRNGWGKTILLGVSGNKAPISIPSHEILRGRSVIGSLFGGIKPKNDIPMLAQKYLDKE 255
Query: 433 LPLDEFVTHNVPLKEINEAFHL 498
L L+EF+TH + +EIN AF L
Sbjct: 256 LELEEFITHEMGFEEINRAFEL 277
Score = 71.3 bits (167), Expect = 6e-13
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDY-DKPIQQVLVDLT-DGGLEYTFECIGNVGTM 241
RIIGVD+NPDKF+V K+ G+ +F+NP D K + +V+ ++T GG +Y FECIG+ M
Sbjct: 132 RIIGVDLNPDKFDVGKRLGMTDFINPNDTGGKTVSEVIKEMTGGGGADYCFECIGSTSVM 191
Query: 242 RAALELAIRDG 274
A + + R+G
Sbjct: 192 AEAFQ-STRNG 201
>10_01_0343 -
3773274-3773390,3773476-3773637,3773758-3773853,
3773956-3774009
Length = 142
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +1
Query: 262 HKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL 441
H GWG++V++G+ A + P +L GR G FG +K + +P++V++ ++ ++ +
Sbjct: 49 HDGWGLTVVLGIHATPRMLPLHPMELFDGRRITGCVFGDFKGKSQLPEIVEKCMQGEINI 108
Query: 442 --DEFVTHNVPLKEINEAFHL 498
D F+T +P +IN+AF L
Sbjct: 109 NFDGFITQELPFADINKAFQL 129
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/51 (39%), Positives = 35/51 (68%)
Frame = +2
Query: 122 GVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRAALELAIRDG 274
G+ +F+N K KP+ +V++++TDGG++Y+FEC G +R A ++ DG
Sbjct: 2 GITDFINSKASGKPVHEVIMEMTDGGVDYSFECTGITDVLREAF-VSTHDG 51
>03_01_0636 -
4664472-4664588,4664695-4664856,4664984-4665061,
4665157-4665221,4665476-4665558,4666052-4666414,
4666512-4666555,4666632-4666765,4666881-4666917
Length = 360
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = +1
Query: 268 GWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDE 447
G G ++I+GV + + F+ + G+ G+ FGG K + +P L ++ + K+L L++
Sbjct: 269 GRGKTIILGVEKDSQPLCLPSFEFLFGKCVMGSLFGGAKPKTDIPILAEKCMNKELELEK 328
Query: 448 FVTHNVPLKEINEAFHL 498
VTH V L EIN AF L
Sbjct: 329 LVTHEVGLTEINTAFDL 345
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +2
Query: 113 KKFGVNEFVNPKDY-DKPIQQVLVDLTDGGLEYTFECIGNVGTMRAA 250
K+FGV +FVNP DK + +V+ +TDGG +Y+FECIG M A
Sbjct: 222 KEFGVTDFVNPSQLGDKSVSEVINAMTDGGADYSFECIGISSVMTEA 268
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 356 QVRPVTSWN-GRV--LISSPAAATPMIT 282
QVR T+W GRV L+ SPA+A P+IT
Sbjct: 423 QVRDTTAWTLGRVFELLHSPASANPIIT 450
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDY 154
+RIIGVDINP+KF +K+ + + N KDY
Sbjct: 244 SRIIGVDINPEKF--SKECALVQ--NDKDY 269
>12_01_0849 + 7948693-7948996,7949829-7950610
Length = 361
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = +1
Query: 223 WKCRHHESCTRACHKGWGVSVIIGVAAAGEEISTRP 330
W+CRH + +R C +V+I + ++ P
Sbjct: 229 WRCRHCTASSRLCRLAGAAAVVIAILPRRRRVALHP 264
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -2
Query: 377 PPKAVPFQVRPVTSWNGRVLISSPAAATPMITDTPHPLWQALVQLSWCLHFQYIQKCILD 198
PP P ++ PV ++ A P+IT T P ++ C+HF C +
Sbjct: 40 PPPPPPPRLEPVVVVAPSTTTAT-ATLPPIITPTLSPSTSTCLE---CVHFNSCSGCTHE 95
Query: 197 HHQSNPPVLVEL 162
PPVL E+
Sbjct: 96 VDLDKPPVLQEV 107
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 377 PPKAVPFQVRPVTSWNGRVLISSPAAATPMITDTPHPLWQAL 252
PP P P S GRV + + AA + DTP +W L
Sbjct: 88 PPPEAPPAASPSPS-GGRVRLYASAARAKYLVDTPEHIWGRL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,007
Number of Sequences: 37544
Number of extensions: 315513
Number of successful extensions: 857
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -