Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0312
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)            135   2e-32
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         30   1.8  
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                29   2.4  
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 27   9.8  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score =  135 bits (327), Expect = 2e-32
 Identities = 61/81 (75%), Positives = 70/81 (86%)
 Frame = +1

Query: 256 ACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKL 435
           ACHKGWG SVIIGVAA G+EISTRPFQLVTGR WKGTAFGGYKS + VP+LV++YL  K+
Sbjct: 29  ACHKGWGESVIIGVAAGGQEISTRPFQLVTGRVWKGTAFGGYKSGDGVPQLVEDYLAGKV 88

Query: 436 PLDEFVTHNVPLKEINEAFHL 498
            +DEFVTHN+ L +INEAF L
Sbjct: 89  MVDEFVTHNMGLDKINEAFDL 109



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 24/28 (85%), Positives = 26/28 (92%)
 Frame = +2

Query: 173 VLVDLTDGGLEYTFECIGNVGTMRAALE 256
           VLVD+TDGGL+YTFECIGNV TMR ALE
Sbjct: 1   VLVDMTDGGLDYTFECIGNVHTMRQALE 28


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 223 WKCRHHESCTRAC 261
           WKCRHHE CT+ C
Sbjct: 434 WKCRHHE-CTKLC 445


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +3

Query: 288 HWC--SCCWRRDQHSSIPTCYRSHLEGNSFWRLQK---*RKCTKACR*VLGEEAAFRRIC 452
           H C  +C WR D+ + I TC     +    WRL +      C   CR  +  +A   R C
Sbjct: 126 HTCKSTCRWRLDRQADIHTC-----KSTCRWRLDRQADIHTCKSTCRWRINRQADIHR-C 179

Query: 453 HSQCAAEGDQ 482
            S C  + D+
Sbjct: 180 KSTCRWQLDR 189


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -1

Query: 486 LIDLLQRHIVSDKFV*RQLLLQVLIYKLWYTFSTFVTSKSCSLPGATCNKLEWTSADLFS 307
           LI   +RH +   F     L+  + YK W  FS  +       P  TC        D+FS
Sbjct: 583 LIHRKERHDLERAF---HCLICGVTYKSWRPFSYHLFQAHSDTPPITCPHCPKKFHDIFS 639

Query: 306 SSSYTNDH*H 277
             ++  +H H
Sbjct: 640 FDNHQKEHRH 649


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 358  KGTAFGGYKSRES-VPKLVDEYLEKKLPLDEFVTHNV 465
            K ++ GG ++RES V K+ D+ LE KLP ++++ H V
Sbjct: 973  KDSSSGGGETRESIVHKMADDMLE-KLP-EDYIQHEV 1007


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,483
Number of Sequences: 59808
Number of extensions: 357028
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)