Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0312
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical ... 131 4e-31
U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol dehydro... 130 6e-31
AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical ... 130 6e-31
AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical ... 130 6e-31
Z66511-6|CAA91318.1| 343|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z66515-1|CAA91347.1| 218|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 29 3.7
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 29 3.7
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 6.5
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 6.5
Z66561-3|CAA91455.1| 422|Caenorhabditis elegans Hypothetical pr... 27 8.6
>AC025722-1|AAK68507.1| 554|Caenorhabditis elegans Hypothetical
protein Y50D4C.2 protein.
Length = 554
Score = 131 bits (317), Expect = 4e-31
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +1
Query: 256 ACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKL 435
A HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTAFGG+KS ESVP+LVD+Y+ KKL
Sbjct: 461 AAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKL 520
Query: 436 PLDEFVTHNVPLKEINEAF 492
+DEF+TH + +IN AF
Sbjct: 521 LIDEFITHRCNIDDINAAF 539
Score = 75.4 bits (177), Expect = 3e-14
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKP----IQQVLVDLTDGGLEYTFECIGNVG 235
+I+G+D+ KFE AK FG E +NPK + P Q LV+ DGG +YTFECIGNV
Sbjct: 394 KIVGIDLIESKFEKAKMFGATECINPKSVELPEGKSFQSWLVEQFDGGFDYTFECIGNVH 453
Query: 236 TMRAALELA 262
TMR ALE A
Sbjct: 454 TMRQALEAA 462
>U18781-1|AAB03374.1| 384|Caenorhabditis elegans alcohol
dehydrogenase protein.
Length = 384
Score = 130 bits (315), Expect = 6e-31
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +1
Query: 256 ACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKL 435
A HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTAFGG+KS ESVP+LVD+Y+ KKL
Sbjct: 288 AAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKL 347
Query: 436 PLDEFVTHNVPLKEINEAF 492
+DEF+TH + +IN AF
Sbjct: 348 LIDEFITHRWNIDDINTAF 366
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKP----IQQVLVDLTDGGLEYTFECIGNVG 235
+I+G+D+ KFE AK FG E +NPK + P Q LV+ DGG +YTFECIGNV
Sbjct: 221 KIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVH 280
Query: 236 TMRAALELA 262
TMR ALE A
Sbjct: 281 TMRQALEAA 289
>AC006663-4|AAF39899.1| 384|Caenorhabditis elegans Hypothetical
protein H24K24.3a protein.
Length = 384
Score = 130 bits (315), Expect = 6e-31
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +1
Query: 256 ACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKL 435
A HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTAFGG+KS ESVP+LVD+Y+ KKL
Sbjct: 288 AAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKL 347
Query: 436 PLDEFVTHNVPLKEINEAF 492
+DEF+TH + +IN AF
Sbjct: 348 LIDEFITHRWNIDDINTAF 366
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKP----IQQVLVDLTDGGLEYTFECIGNVG 235
+I+G+D+ KFE AK FG E +NPK + P Q LV+ DGG +YTFECIGNV
Sbjct: 221 KIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVH 280
Query: 236 TMRAALELA 262
TMR ALE A
Sbjct: 281 TMRQALEAA 289
>AC006663-3|AAL32231.1| 386|Caenorhabditis elegans Hypothetical
protein H24K24.3b protein.
Length = 386
Score = 130 bits (315), Expect = 6e-31
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = +1
Query: 256 ACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKL 435
A HKGWGVS IIGVA AG+EI+TRPFQLVTGRTWKGTAFGG+KS ESVP+LVD+Y+ KKL
Sbjct: 290 AAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKL 349
Query: 436 PLDEFVTHNVPLKEINEAF 492
+DEF+TH + +IN AF
Sbjct: 350 LIDEFITHRWNIDDINTAF 368
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKP----IQQVLVDLTDGGLEYTFECIGNVG 235
+I+G+D+ KFE AK FG E +NPK + P Q LV+ DGG +YTFECIGNV
Sbjct: 223 KIVGIDLIESKFESAKFFGATECINPKSVELPEGKSFQAWLVEQFDGGFDYTFECIGNVH 282
Query: 236 TMRAALELA 262
TMR ALE A
Sbjct: 283 TMRQALEAA 291
>Z66511-6|CAA91318.1| 343|Caenorhabditis elegans Hypothetical
protein F07A11.5 protein.
Length = 343
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 89 NPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTD 193
N FE+A+ GV F+NP D + + +++L D
Sbjct: 179 NRRAFEIARSHGVTTFLNPAPGDPNMDKTILELVD 213
>Z66515-1|CAA91347.1| 218|Caenorhabditis elegans Hypothetical
protein R53.2 protein.
Length = 218
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 394 SVPKLVDEYLEKKLPLDEFVTH 459
S+ KL+D+YL K++ +DE H
Sbjct: 59 SIGKLIDQYLRKEIDMDEHALH 80
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +1
Query: 235 HHESCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVD 414
+++ CTR H I+ VAA E RP + WKG G + K ++
Sbjct: 59 NYKGCTRGKHSNEKPVDIVKVAAVKE---IRPEKEEDVIVWKGLNKSGKLDSKDATKRIE 115
Query: 415 EYLEKKLPLDEFVTHNVPLKEINEA 489
+ L ++ LKEI+EA
Sbjct: 116 QNLNVEVTPGATAAIEKKLKEISEA 140
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +1
Query: 235 HHESCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVD 414
+++ CTR H I+ VAA E RP + WKG G + K ++
Sbjct: 59 NYKGCTRGKHSNEKPVDIVKVAAVKE---IRPEKEEDVIVWKGLNKSGKLDSKDATKRIE 115
Query: 415 EYLEKKLPLDEFVTHNVPLKEINEA 489
+ L ++ LKEI+EA
Sbjct: 116 QNLNVEVTPGATAAIEKKLKEISEA 140
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 6.5
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Frame = +2
Query: 89 NPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLT--DGGLEYT-----FECIGNVGTMRA 247
N E+ +KF NEF PK +++ +++V+ L+ + GL+ T EC G + +RA
Sbjct: 1283 NETMAELKRKF--NEFKRPKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRA 1340
Query: 248 ALELAIRDGVCQ*SLV*LLLEKRSALVHSNLLQVAPGREQLLEV----TKVEKVYQ 403
+ + DG + L E R LV +L +E L ++ TK +++Y+
Sbjct: 1341 LVRML--DGAQEKWKD--LAENREQLVKDRVLDEETSKETLQKLQYAKTKSKELYE 1392
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.9 bits (59), Expect = 6.5
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Frame = +2
Query: 89 NPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLT--DGGLEYT-----FECIGNVGTMRA 247
N E+ +KF NEF PK +++ +++V+ L+ + GL+ T EC G + +RA
Sbjct: 1283 NETMAELKRKF--NEFKRPKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRA 1340
Query: 248 ALELAIRDGVCQ*SLV*LLLEKRSALVHSNLLQVAPGREQLLEV----TKVEKVYQ 403
+ + DG + L E R LV +L +E L ++ TK +++Y+
Sbjct: 1341 LVRML--DGAQEKWKD--LAENREQLVKDRVLDEETSKETLQKLQYAKTKSKELYE 1392
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.9 bits (59), Expect = 6.5
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Frame = +2
Query: 89 NPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLT--DGGLEYT-----FECIGNVGTMRA 247
N E+ +KF NEF PK +++ +++V+ L+ + GL+ T EC G + +RA
Sbjct: 1283 NETMAELKRKF--NEFKRPKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRA 1340
Query: 248 ALELAIRDGVCQ*SLV*LLLEKRSALVHSNLLQVAPGREQLLEV----TKVEKVYQ 403
+ + DG + L E R LV +L +E L ++ TK +++Y+
Sbjct: 1341 LVRML--DGAQEKWKD--LAENREQLVKDRVLDEETSKETLQKLQYAKTKSKELYE 1392
>Z66561-3|CAA91455.1| 422|Caenorhabditis elegans Hypothetical
protein F08G12.3 protein.
Length = 422
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 367 AFGGYKSRESVPKLVDEYLEKKLPLDEFV--THNVPLKEINEAF 492
A ++ R++V + + Y+EKK L EFV N+ L+E++ F
Sbjct: 288 AIRSWEDRKAVAEHIHTYVEKKSLLHEFVRKISNIGLRELSGFF 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,286
Number of Sequences: 27780
Number of extensions: 275664
Number of successful extensions: 729
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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