Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0312
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43940.1 68418.m05376 alcohol dehydrogenase class III / gluta... 132 1e-31
At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical t... 89 3e-18
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar... 87 9e-18
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar... 87 9e-18
At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar... 83 1e-16
At1g32780.1 68414.m04041 alcohol dehydrogenase, putative similar... 80 1e-15
At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar... 75 3e-14
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar... 73 1e-13
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar... 72 3e-13
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar... 69 4e-12
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar... 69 4e-12
At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative / L-id... 36 0.023
At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative / L-id... 36 0.023
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 30 1.1
At2g26860.2 68415.m03223 F-box family protein contains F-box dom... 29 2.6
At2g26860.1 68415.m03222 F-box family protein contains F-box dom... 29 2.6
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf... 28 6.1
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 28 6.1
>At5g43940.1 68418.m05376 alcohol dehydrogenase class III /
glutathione-dependent formaldehyde dehydrogenase /
GSH-FDH (ADHIII) identical to gi:1143388
Length = 379
Score = 132 bits (320), Expect = 1e-31
Identities = 56/80 (70%), Positives = 70/80 (87%)
Frame = +1
Query: 259 CHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLP 438
CHKGWG SVI+GVAA+G+EISTRPFQLVTGR WKGTAFGG+KSR VP LV++Y+ K++
Sbjct: 285 CHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIK 344
Query: 439 LDEFVTHNVPLKEINEAFHL 498
+DE++THN+ L EIN+AF L
Sbjct: 345 VDEYITHNLTLGEINKAFDL 364
Score = 113 bits (272), Expect = 9e-26
Identities = 49/64 (76%), Positives = 59/64 (92%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIG+DI+ K+E AKKFGVNEFVNPKD+DKPIQ+V+VDLTDGG++Y+FECIGNV MR
Sbjct: 220 SRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMR 279
Query: 245 AALE 256
AALE
Sbjct: 280 AALE 283
>At1g77120.1 68414.m08982 alcohol dehydrogenase (ADH) identical to
alcohol dehydrogenase GI:469467 from (Arabidopsis
thaliana)
Length = 379
Score = 88.6 bits (210), Expect = 3e-18
Identities = 35/77 (45%), Positives = 52/77 (67%)
Frame = +1
Query: 262 HKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL 441
H GWGV+V++GV + + T P + RT KGT FG YK + +P +V++Y+ K+L L
Sbjct: 286 HDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKGTFFGNYKPKTDIPGVVEKYMNKELEL 345
Query: 442 DEFVTHNVPLKEINEAF 492
++F+TH VP EIN+AF
Sbjct: 346 EKFITHTVPFSEINKAF 362
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/70 (55%), Positives = 52/70 (74%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIGVD N +F+ AK+FGV E VNPKD+DKPIQQV+ ++TDGG++ + EC G+V M
Sbjct: 220 SRIIGVDFNSKRFDQAKEFGVTECVNPKDHDKPIQQVIAEMTDGGVDRSVECTGSVQAMI 279
Query: 245 AALELAIRDG 274
A E + DG
Sbjct: 280 QAFE-CVHDG 288
>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 352
Score = 87.0 bits (206), Expect = 9e-18
Identities = 35/82 (42%), Positives = 57/82 (69%)
Frame = +1
Query: 253 RACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKK 432
++C GWG++V +GV A E+S ++G++ KGT FGG+K + +P L+D+Y+ K+
Sbjct: 256 QSCSDGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKE 315
Query: 433 LPLDEFVTHNVPLKEINEAFHL 498
+ +DEF+THN+ EIN+AF L
Sbjct: 316 IMIDEFITHNLSFDEINKAFVL 337
Score = 73.7 bits (173), Expect = 9e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRA 247
+I+GVDINP K E AK FGV +F+N D +PI QV+ +T GG +++FEC+G+ G
Sbjct: 194 QILGVDINPAKAEQAKTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATT 253
Query: 248 ALE 256
AL+
Sbjct: 254 ALQ 256
>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 381
Score = 87.0 bits (206), Expect = 9e-18
Identities = 35/82 (42%), Positives = 57/82 (69%)
Frame = +1
Query: 253 RACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKK 432
++C GWG++V +GV A E+S ++G++ KGT FGG+K + +P L+D+Y+ K+
Sbjct: 285 QSCSDGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKE 344
Query: 433 LPLDEFVTHNVPLKEINEAFHL 498
+ +DEF+THN+ EIN+AF L
Sbjct: 345 IMIDEFITHNLSFDEINKAFVL 366
Score = 73.7 bits (173), Expect = 9e-14
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMRA 247
+I+GVDINP K E AK FGV +F+N D +PI QV+ +T GG +++FEC+G+ G
Sbjct: 223 QILGVDINPAKAEQAKTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATT 282
Query: 248 ALE 256
AL+
Sbjct: 283 ALQ 285
>At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GI:551257 from [Nicotiana tabacum]
Length = 396
Score = 83.4 bits (197), Expect = 1e-16
Identities = 32/71 (45%), Positives = 56/71 (78%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
++IIG+DINPDKF++ ++ G++EF+NPK+ DK + + ++++T+GG+EY+FEC G++ +R
Sbjct: 239 SKIIGIDINPDKFQLGREAGISEFINPKESDKAVHERVMEITEGGVEYSFECAGSIEALR 298
Query: 245 AALELAIRDGV 277
A L+ GV
Sbjct: 299 EAF-LSTNSGV 308
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/79 (35%), Positives = 48/79 (60%)
Frame = +1
Query: 262 HKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL 441
+ G GV+V++GV A+ + + P +L GR+ + FGG+K + +P + + L+ L L
Sbjct: 305 NSGVGVTVMLGVHASPQLLPIHPMELFQGRSITASVFGGFKPKTQLPFFITQCLQGLLNL 364
Query: 442 DEFVTHNVPLKEINEAFHL 498
D F++H +P +INEA L
Sbjct: 365 DLFISHQLPFHDINEAMQL 383
>At1g32780.1 68414.m04041 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GB:CAA37333 GI:297178 from
[Solanum tuberosum]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 394
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+RIIGVD N KFE K GV +F+NPKD KP+ Q++ ++T GG++Y+FEC GNV +R
Sbjct: 231 SRIIGVDANASKFEKGKLMGVTDFINPKDLTKPVHQMIREITGGGVDYSFECTGNVDVLR 290
Query: 245 AA 250
A
Sbjct: 291 EA 292
Score = 66.1 bits (154), Expect = 2e-11
Identities = 25/79 (31%), Positives = 46/79 (58%)
Frame = +1
Query: 262 HKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPL 441
H GWG +V++G+ + P +L GR G+ FGG+K + +P + ++ + L
Sbjct: 297 HVGWGSTVLVGIYPTPRTLPLHPMELFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKL 356
Query: 442 DEFVTHNVPLKEINEAFHL 498
+ F+T+ +P ++IN+AF L
Sbjct: 357 EPFITNELPFEKINDAFQL 375
>At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 386
Score = 75.4 bits (177), Expect = 3e-14
Identities = 37/95 (38%), Positives = 58/95 (61%)
Frame = +1
Query: 241 ESCTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEY 420
E ++ G G ++++G+ IS + L+ GRT GT FGG K + +P LVD Y
Sbjct: 286 EEAFKSTRPGSGKTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRY 345
Query: 421 LEKKLPLDEFVTHNVPLKEINEAFHLXXAENLSVQ 525
L+K+L L++ +TH + +EIN+AFHL AE S++
Sbjct: 346 LKKELNLEDLITHELSFEEINKAFHL-LAEGNSIR 379
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPK-DYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+IIGVD+NP KFE+ K+FG+ +FVNP +K I +V+ ++TD G +Y+FECIG M
Sbjct: 227 KIIGVDLNPAKFEIGKRFGITDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLME 286
Query: 245 AALE 256
A +
Sbjct: 287 EAFK 290
>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 388
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = +1
Query: 268 GWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDE 447
G G +V++G+ IS F L+ GR G+ FGG KS+ +P LVD YL+K+L LD
Sbjct: 297 GTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDS 356
Query: 448 FVTHNVPLKEINEAFHL 498
F+TH + KEIN+AF L
Sbjct: 357 FITHELNFKEINKAFAL 373
Score = 70.5 bits (165), Expect = 9e-13
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPK-DYDKPIQQVLVDLTDGGLEYTFECIGNVGTMR 244
+IIG+D N DKFE+ KKFG +F+NP +K I +V+ ++T+GG++Y+FEC+G +
Sbjct: 229 KIIGIDTNSDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLN 288
Query: 245 AALELAIRDGVCQ*SLV*LLLEKRSALVHSNLLQVAPGR 361
A ++ R G + V L +EK +A + + GR
Sbjct: 289 EAF-ISTRTGTGK--TVMLGMEKHAAPISLGSFDLLRGR 324
>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 390
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Frame = +2
Query: 65 NRIIGVDINPDKFEVAKKFGVNEFVNPKDYDK-PIQQVLVDLTDGGLEYTFECIGNVGTM 241
+RIIGVDINP KF+V +KFGV EFVN +K + +V+ ++TDGG +Y FEC+G+ +
Sbjct: 230 SRIIGVDINPTKFQVGQKFGVTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLV 289
Query: 242 RAA 250
+ A
Sbjct: 290 QEA 292
Score = 72.1 bits (169), Expect = 3e-13
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 259 CHKGWGVSVIIGVAAAGEEISTRPFQLVT-GRTWKGTAFGGYKSRESVPKLVDEYLEKKL 435
C +GWG ++ +GV G +I F ++ G+ G+ FGG K++ +P L+ YL +L
Sbjct: 296 CRQGWGKTITLGVDKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNEL 355
Query: 436 PLDEFVTHNVPLKEINEAFHL 498
LD+FVTH + +EIN+AF L
Sbjct: 356 ELDKFVTHEMKFEEINDAFQL 376
>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/77 (42%), Positives = 48/77 (62%)
Frame = +1
Query: 268 GWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDE 447
G G +V++G+ +S F L+ GR G+ FGG K + +P LVD YL+K+L LD
Sbjct: 298 GSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDS 357
Query: 448 FVTHNVPLKEINEAFHL 498
F+TH + +EIN+AF L
Sbjct: 358 FITHELKFEEINKAFDL 374
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPK-DYDKPIQQVLVDLTDGGLEYTFECIG 226
+IIGVD+NP+KFE+ KKFG +F+N + I +V+ ++T GG++Y+FEC+G
Sbjct: 230 KIIGVDLNPEKFELGKKFGFTDFINSTLCGENKISEVIKEMTGGGVDYSFECVG 283
>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 68.5 bits (160), Expect = 4e-12
Identities = 33/77 (42%), Positives = 48/77 (62%)
Frame = +1
Query: 268 GWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLVDEYLEKKLPLDE 447
G G +V++G+ +S F L+ GR G+ FGG K + +P LVD YL+K+L LD
Sbjct: 298 GSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDS 357
Query: 448 FVTHNVPLKEINEAFHL 498
F+TH + +EIN+AF L
Sbjct: 358 FITHELKFEEINKAFDL 374
Score = 64.5 bits (150), Expect = 6e-11
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFVNPK-DYDKPIQQVLVDLTDGGLEYTFECIG 226
+IIGVD+NP+KFE+ KKFG +F+N + I +V+ ++T GG++Y+FEC+G
Sbjct: 230 KIIGVDLNPEKFELGKKFGFTDFINSTLCGENKISEVIKEMTGGGVDYSFECVG 283
>At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative /
L-iditol 2-dehydrogenase, putative similar to
NAD-dependent sorbitol dehydrogenase from Malus x
domestica [gi:4519539]
Length = 364
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFV----NPKDYDKPIQQVLVDLTDGGLEYTFECIGNVG 235
RI+ VD++ ++ VAK+ G +E V N +D ++Q+ + ++ TF+C G
Sbjct: 208 RIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGSEVEQIQKAM-GSNIDVTFDCAGFNK 266
Query: 236 TMRAAL 253
TM AL
Sbjct: 267 TMSTAL 272
>At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative /
L-iditol 2-dehydrogenase, putative similar to
NAD-dependent sorbitol dehydrogenase from Malus x
domestica [gi:4519539]
Length = 364
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 68 RIIGVDINPDKFEVAKKFGVNEFV----NPKDYDKPIQQVLVDLTDGGLEYTFECIGNVG 235
RI+ VD++ ++ VAK+ G +E V N +D ++Q+ + ++ TF+C G
Sbjct: 208 RIVIVDVDENRLAVAKQLGADEIVQVTTNLEDVGSEVEQIQKAM-GSNIDVTFDCAGFNK 266
Query: 236 TMRAAL 253
TM AL
Sbjct: 267 TMSTAL 272
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 247 CTRACHKGWGVSVIIGVAAAGEEISTRPFQLVTGRTWKGTAFGGYKSRESVPKLV 411
CT + G G +V+IG++ AG +LV + W ++GG ++R+ +PK+V
Sbjct: 331 CTLSVKDG-GKAVMIGLSQAGSVGEIDINRLVRRKVWVIGSYGG-RARQDLPKVV 383
>At2g26860.2 68415.m03223 F-box family protein contains F-box domain
Pfam:PF00646
Length = 355
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +1
Query: 397 VPKL--VDEYLEKKLPLDEFVTHNVPL--KEINEAFHL 498
VPKL V + E LP+ +F+T N+ L ++ E+FHL
Sbjct: 41 VPKLTFVMNHYESDLPIQDFITKNLRLLKPQVIESFHL 78
>At2g26860.1 68415.m03222 F-box family protein contains F-box domain
Pfam:PF00646
Length = 405
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +1
Query: 397 VPKL--VDEYLEKKLPLDEFVTHNVPL--KEINEAFHL 498
VPKL V + E LP+ +F+T N+ L ++ E+FHL
Sbjct: 41 VPKLTFVMNHYESDLPIQDFITKNLRLLKPQVIESFHL 78
>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
PF03637: Mob1/phocein family; contains Pfam F00560:
Leucine Rich Repeats; contains TIGRFAMS profile
TIGR01612: reticulocyte binding protein; hypothetical
protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
Length = 1405
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 297 SCCWRRDQHSSIPTCYRSHLEGNSF 371
S C RDQ S I C S EG+SF
Sbjct: 907 SSCIERDQWSQIKECLTSKSEGSSF 931
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Frame = +2
Query: 101 FEVAKKFGVNEFVN-----PKDYDKPIQQVLVDLTDG 196
+ V KK G+ FV PKD +P++ V ++ DG
Sbjct: 147 YVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADG 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,327
Number of Sequences: 28952
Number of extensions: 253916
Number of successful extensions: 654
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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