Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0311
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.0  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    21   9.5  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    21   9.5  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 561 HSKLSETNQLILSYIKTHRVGRQKLEKSVILRPSPSH 451
           ++ L+E   LIL  +K       KLEK+ IL  +  H
Sbjct: 51  NNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKH 87


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 121 SFTVCSIVVFLIFH 162
           ++ VC+  +FLIFH
Sbjct: 153 TYYVCNTTIFLIFH 166


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 550  KRDKSINPELYKNP*SRKTEIGEIRHSE 467
            KRD  +NP   ++P  RK E+  +  +E
Sbjct: 1205 KRDDLVNPYWIEDPDVRKGEVEFLSSTE 1232


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 550  KRDKSINPELYKNP*SRKTEIGEIRHSE 467
            KRD  +NP   ++P  RK E+  +  +E
Sbjct: 1205 KRDDLVNPYWIEDPDVRKGEVEFLSSTE 1232


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 550  KRDKSINPELYKNP*SRKTEIGEIRHSE 467
            KRD  +NP   ++P  RK E+  +  +E
Sbjct: 1205 KRDDLVNPYWIEDPDVRKGEVEFLSSTE 1232


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 550  KRDKSINPELYKNP*SRKTEIGEIRHSE 467
            KRD  +NP   ++P  RK E+  +  +E
Sbjct: 1205 KRDDLVNPYWIEDPDVRKGEVEFLSSTE 1232


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -3

Query: 329 SFVTAREKRYNLGRARVRK*TERLATTRPWREGQVKASYVVSL 201
           +F+   ++R  + +  + +   R   T  + +G+V ASY   L
Sbjct: 539 AFLAVLKRRTEIYKGLIDRIKSREKLTMKFHDGEVDASYFCKL 581


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 118 FHFCHVHQVARRPFFINYSLIFGSIIYFYL 29
           F  C       R F +    IFG   YF++
Sbjct: 214 FDLCQAADDLNRYFEVQVLTIFGVSFYFFI 243


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 118 FHFCHVHQVARRPFFINYSLIFGSIIYFYL 29
           F  C       R F +    IFG   YF++
Sbjct: 210 FDLCQAADDLNRYFEVQVLTIFGVSFYFFI 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,183
Number of Sequences: 336
Number of extensions: 2733
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)